Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anolis_20carolinensis_20[refseq_20GCF_5F000090745.1_202011-01-10] 6,457 sequences; 1,799,143,587 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq6 96.9 4e-15 seq514 93.3 5e-14 seq201 87.8 2e-12 >seq6 Length=80741955 Score = 96.9 bits (106), Expect = 4e-15 Identities = 99/127 (78%), Gaps = 2/127 (2%) Strand=Plus/Plus Query 117304 AGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCA-GCAAGACGCGTACCGAATT 117362 |||||| ||||| |||| ||| |||| ||||| |||||| |||| | ||||| |||| Sbjct 70026771 AGTGAAGATGTATCGAGGGCTAGCAGAGTCCTTCCCACCATGCAACCTG-GTACCAAATT 70026829 Query 117363 GTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGA 117422 | ||| | |||| | | ||| ||||| ||| ||||||||||||||||||||| |||| Sbjct 70026830 GACCAATGGGCTGAAGCAAGTTAAGGTTATTGCTGCCCACAAAGTTTTGAGCCAAATTGA 70026889 Query 117423 CAATCGT 117429 ||| || Sbjct 70026890 TAATAGT 70026896 Score = 82.4 bits (90), Expect = 8e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 |||||||||||||| | ||| || | ||||| ||||| || || || ||||| || Sbjct 70026772 GTGAAGATGTATCGAGGGCTAGCAGAGTCCTTCCCACCATGCAACCTGGTACCAAATTGA 70026831 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| ||||| || | ||| ||||| ||| |||||| || || ||||||||||| | | Sbjct 70026832 CCAATGGGCTGAAGCAAGTTAAGGTTATTGCTGCCCACAAAGTTTTGAGCCAAATTGATA 70026891 Query 152149 ATCGT 152153 || || Sbjct 70026892 ATAGT 70026896 >seq514 Length=269024 Score = 93.3 bits (102), Expect = 5e-14 Identities = 78/96 (81%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 55484 CGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAAC 55543 || ||| ||| || ||||| || ||||| || || || |||||||||||| |||||||| Sbjct 191020 CGGAACAGCCTCCTGGTGGCCCCGATGCCCACGGCTTCCACGGCTCAGATCCTGGGCAAC 191079 Query 55544 AACGAGGCGTTCGAGCCGTACACGACCAACATCTAC 55579 |||||| | | ||||| ||||||| |||||||||| Sbjct 191080 AACGAGTCCATAGAGCCCTACACGAGCAACATCTAC 191115 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 53327 TCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTC 53386 || ||||| |||||| || |||||||| ||| ||||| ||||||||||| || ||| Sbjct 173115 TCCAGCTGTTTCCTGCTGTGCATGAAGGACGACAGCATCGAAGGCATCTACGACACACTC 173174 Query 53387 AAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGG 53427 ||| | ||||| | ||||||||||| | | || || ||||| Sbjct 173175 AAGCACTGTGCGCTCATCTCCAAGTCGGCCGGAGGGATCGG 173215 >seq201 Length=1021283 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 117304 AGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTG 117363 |||||| |||||||||| ||||||||||| ||||||||| ||| | ||||| || || Sbjct 769334 AGTGAAGATGTAACGAGGACTTGCAGCATCTTTGCCACCATGAAGCCTAGTACCAAACTG 769275 Query 117364 TCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGAC 117423 ||| | |||| | | | | ||||| ||| || ||||| |||||||||||||| Sbjct 769274 ACCAATAGGCTGTAGCAAACTGACATTGTTACTGCCAACGAAGTTCTGAGCCAAGTTGAC 769215 Query 117424 AATCGT 117429 ||| || Sbjct 769214 AATAGT 769209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547171832828600