Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anolis_20carolinensis_20[refseq_20GCF_5F000090745.1_202011-01-10] 6,457 sequences; 1,799,143,587 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq3801 159 4e-34 seq514 95.1 1e-14 >seq3801 Length=8881 Score = 159 bits (176), Expect = 4e-34 Identities = 165/216 (76%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || |||||||| || ||||| || || || || || Sbjct 4357 ATGCAGATCTTTGTGAAGACCCTCACTGGCAAGACCATCACTCTCGAAGTGGAACCAAGT 4298 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| | ||||| ||||| || ||||| ||||| || |||||||| ||| Sbjct 4297 GACACCATTGAGAATGTTAAGGCGAAAATCCAAGACAAAGAGGGCATCCCTCCAGATCAG 4238 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || | | ||||| || || ||||| || || |||| || || || |||| ||||| Sbjct 4237 CAAAGGTTGATTTTCGCCGGGAAGCAGCTTGAAGATGGCCGCACTCTGTCAGATTATAAC 4178 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGT 27621 |||| |||||||||||||| || || ||| ||||| Sbjct 4177 ATCCAGAAGGAATCCACTCTCCACCTTGTCCTGCGT 4142 Score = 152 bits (168), Expect = 6e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||| ||||| || ||||||||||| || ||||| || || ||| | | Sbjct 3901 ATGCAGATTTTTGTGAAGACCCTCACCGGCAAGACCATCACTCTCGAAGTCGAGCCCAGC 3842 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || ||||||| ||||| || |||||||| || || || ||||||||| Sbjct 3841 GACACCATTGAGAACGTGAAGGCGAAAATCCAAGACAAGGAAGGCATCCCCCCAGACCAG 3782 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || ||||| || ||||| ||||| |||| || || || | ||||| || Sbjct 3781 CAGAGGCTCATCTTTGCCGGGAAGCAGCTCGAAGATGGCCGCACTCTTTCCGACTACAAC 3722 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| || || || || |||| || || || || Sbjct 3721 ATCCAGAAGGAGTCCACCCTCCACCTGGTGCTGCGCCTCCGGGGCGG 3675 Score = 149 bits (164), Expect = 7e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||||||||| || | || || || || || ||||| || || ||| | || Sbjct 4129 ATGCAGATCTTTGTCAAAACCTTGACTGGAAAAACCATCACTCTCGAAGTCGAGCCGAGT 4070 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || | ||||| ||||| || ||||| || || ||||||||||||||| Sbjct 4069 GACACCATTGAGAACGTCAAGGCCAAAATCCAAGACAAAGAAGGCATTCCTCCAGACCAG 4010 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | | ||||| || || ||||| || || |||| || || || | ||||| ||| Sbjct 4009 CAGAGATTGATTTTCGCCGGGAAGCAGCTTGAAGATGGCCGCACTCTCTCCGACTACAAT 3950 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || ||||||||||| ||||| || | ||||| || || || Sbjct 3949 ATCCAGAAAGAATCCACTCTCCATCTTGTACTTCGTCTCCGGGGAGG 3903 Score = 145 bits (160), Expect = 9e-30 Identities = 164/220 (75%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 27402 TATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTC 27461 || |||||| |||||||| ||||| | || |||||||| || ||||| ||||| ||| | Sbjct 5729 TAAAATGCAGATCTTTGTGAAGACCTTGACTGGCAAGACCATCACTCTAGAGGTGGAGCC 5670 Query 27462 AGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGA 27521 | |||| | ||||| ||| | ||||| || || || ||||| ||||| || || ||||| Sbjct 5669 AAGTGACACCATTGAGAATGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCAGA 5610 Query 27522 CCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTA 27581 ||||||| | | || || || || || || || || |||| || || || | ||||| Sbjct 5609 CCAGCAGAGGTTGATCTTCGCCGGCAAACAGCTTGAAGATGGCCGCACTCTTTCCGACTA 5550 Query 27582 TAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGT 27621 || |||| || || ||||||||||| || || ||||| Sbjct 5549 CAACATCCAGAAAGAGTCCACTCTTCACCTTGTGCTGCGT 5510 Score = 143 bits (158), Expect = 3e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||||||||| ||||| || || || || || || ||||| || || || || | Sbjct 4585 ATGCAAATCTTTGTGAAGACCCTGACTGGAAAAACCATCACTCTCGAAGTGGAACCAAGC 4526 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| |||| || ||||| || ||||| ||||| || || |||||||| Sbjct 4525 GACACCATTGAGAATGTGAAAGCAAAAATCCAAGACAAAGAGGGCATCCCGCCAGACCAA 4466 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | | |||||||| || || || || || |||| ||||| || | ||||| || Sbjct 4465 CAGAGATTGATTTTTGCCGGCAAACAGCTTGAAGATGGCCGTACTCTGTCCGACTACAAC 4406 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || ||||||||||| || |||| | ||||| || || || Sbjct 4405 ATCCAGAAAGAATCCACTCTCCACTTAGTGCTACGTCTCCGGGGAGG 4359 Score = 141 bits (156), Expect = 1e-28 Identities = 161/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || ||||| || |||||||| ||||| || | || Sbjct 5269 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAAACCATTACTCTAGAGGTGGAACCCAGT 5210 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| ||| | ||||| || || || ||||| ||||| || || ||||||||| Sbjct 5209 GACACTATTGAAAACGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCAGACCAG 5150 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | | ||||| || || |||||||| || |||| ||||| || |||| ||||| Sbjct 5149 CAGAGGTTGATTTTCGCCGGGAAGCAACTTGAAGATGGCCGTACTCTGTCAGATTATAAC 5090 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGT 27621 |||| || || || || || || || || ||||| Sbjct 5089 ATCCAGAAAGAGTCAACCCTCCACCTTGTGCTGCGT 5054 Score = 109 bits (120), Expect = 6e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || || || | || |||||||| || || || |||||||| || | Sbjct 5497 ATGCAGATTTTCGTGAAAACCTTGACTGGCAAGACCATCACCCTGGAGGTTGAACCAAGC 5438 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| ||| | ||||| || || || ||||| || || || || ||||||||| Sbjct 5437 GACACTATTGAAAACGTCAAGGCCAAGATCCAAGACAAAGAAGGCATCCCCCCAGACCAG 5378 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | | || || || || || || || || |||| || || || |||| || || Sbjct 5377 CAGAGGTTGATCTTCGCCGGCAAACAGCTTGAAGATGGCCGCACTCTCTCAGATTACAAC 5318 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 |||| || || |||||||| ||||| || |||| || Sbjct 5317 ATCCAGAAAGAGTCCACTCTCCATCTTGTGCTGCGGCT 5280 >seq514 Length=269024 Score = 95.1 bits (104), Expect = 1e-14 Identities = 115/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 80948 ACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTG 81007 |||| ||||| || ||||| | || |||| || || |||||||| | |||||| Sbjct 181437 ACTCCACGATCTCGGTGCAGAGGTTGCTGCACTTGATGGTCCCCAGGTTCTGCTGGTTGC 181378 Query 81008 ACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACT 81067 ||| |||||| | ||| |||||| ||||||||| || |||||||| ||| |||| Sbjct 181377 TCTTCCTGTTGCAGGAGTCTTTGTAGAGCATGTACGGAGTGCCGGTCTCAGTCTGGGACT 181318 Query 81068 TGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACCAC 81104 || |||||||| ||| | || | ||||||||||| Sbjct 181317 CGATGATGGCGTACCAGAGCTGCTGGGCCTTGACCAC 181281 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570264368821840