Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anolis_20carolinensis_20[refseq_20GCF_5F000090745.1_202011-01-10] 6,457 sequences; 1,799,143,587 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq3801 122 5e-23 >seq3801 Length=8881 Score = 122 bits (134), Expect = 5e-23 Identities = 168/230 (73%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || || || |||| ||| | |||||||||| ||| || || ||||| |||||||| Sbjct 5270 GCCTCCCCTGAGCCGCAGCACAAGATGGAGAGTGGACTCTTTCTGGATGTTGTAATCTGA 5329 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || | |||||||| ||||| ||||| || || || | ||| ||||| || || Sbjct 5330 GAGAGTGCGGCCATCTTCAAGCTGTTTGCCGGCGAAGATCAACCTCTGCTGGTCTGGGGG 5389 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCT-TCGCTCTCC 34656 | || || |||||| |||||| | || ||| | ||| ||||| | | | || Sbjct 5390 GATGCCTTCTTTGTCTTGGATCTTG-GCCTTGACGTTTTCAATAGTGTCGCTTGGT-TCA 5447 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || |||| ||| || || || || || || |||||||| ||||||||||| Sbjct 5448 ACCTCCAGGGTGATGGTCTTGCCAGTCAAGGTTTTCACGAAAATCTGCAT 5497 Score = 113 bits (124), Expect = 3e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 |||||| | || |||| ||||| ||||| ||| |||||| || ||||| || || || Sbjct 3674 GCCGCCCCGGAGGCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 3733 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 ||| || || | ||||| || || || |||||||| || | | ||| ||||| || || Sbjct 3734 AAGAGTGCGGCCATCTTCGAGCTGCTTCCCGGCAAAGATGAGCCTCTGCTGGTCTGGGGG 3793 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCA 34657 | || ||||||||| ||| ||| | || ||| | ||| ||||| | ||| | Sbjct 3794 GATGCCTTCCTTGTCTTGGAT-TTTCGCCTTCACGTTCTCAATGGTGTCGCTGGGCTCGA 3852 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| | || || || || ||||| | || ||||||||||||||||| Sbjct 3853 CTTCGAGAGTGATGGTCTTGCCGGTGAGGGTCTTCACAAAAATCTGCAT 3901 Score = 111 bits (122), Expect = 1e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || || | ||||| ||| | ||||| || ||| || || |||||||||||||| Sbjct 5042 GCCTCCCCTCAAACGCAGCACAAGGTGGAGGGTTGACTCTTTCTGGATGTTATAATCTGA 5101 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || | ||||||||||| || ||||| || || || | ||| ||||| || || Sbjct 5102 CAGAGTACGGCCATCTTCAAGTTGCTTCCCGGCGAAAATCAACCTCTGCTGGTCTGGGGG 5161 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCA 34657 | ||||| |||||| |||| || | || ||| | ||| ||||| | |||| Sbjct 5162 GATGCCCTCTTTGTCTTGGATC-TTGGCCTTGACGTTTTCAATAGTGTCACTGGGTTCCA 5220 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 | || | || || ||||| || || | || |||||||| ||||||||| Sbjct 5221 CCTCTAGAGTAATGGTTTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 5270 Score = 100 bits (110), Expect = 2e-16 Identities = 164/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || || | ||||| || | ||||||||| ||||| || |||||||||||||| Sbjct 4130 GCCTCCCCTCAAACGCAGGACAAGGTGGAGAGTGGATTCCTTCTGGATGTTATAATCTGA 4189 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || | |||||||| || || ||||| || || || | || || || || || Sbjct 4190 CAGAGTGCGGCCATCTTCAAGCTGCTTCCCGGCGAAAATCAACCTTTGCTGATCTGGAGG 4249 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC-TTCGCTCTCC 34656 | ||||| |||||| ||| ||| | ||||| | ||| ||||| | | | ||| Sbjct 4250 GATGCCCTCTTTGTCTTGGAT-TTTCGCCTTAACATTCTCAATGGTGTCACTTGGT-TCC 4307 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 ||||| | || || || || || || | || |||||||| ||||||||| Sbjct 4308 ACTTCGAGAGTGATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCATG 4358 Score = 82.4 bits (90), Expect = 5e-11 Identities = 160/231 (69%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || || || |||| ||| || ||||| ||| || || || || || || || || Sbjct 4814 GCCTCCCCTGAGCCGCAGCACTAAGTGGAGGGTGGATTCTTTCTGGATATTGTAGTCGGA 4873 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || | |||||||| || || ||||| || || || | || || || || || Sbjct 4874 GAGAGTACGGCCATCTTCAAGCTGCTTCCCGGCGAAAATCAACCTTTGCTGATCTGGGGG 4933 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCT-TCGCTCTCC 34656 | || || |||||| |||||| | || ||| | ||| ||||| | | | ||| Sbjct 4934 GATGCCTTCTTTGTCTTGGATCTTG-GCCTTGACGTTTTCAATGGTGTCACTTGGT-TCC 4991 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || || | || || || || || || || ||||| ||||||||||||||| Sbjct 4992 ACCTCTAGTGTGATGGTCTTGCCCGTCAAGGTTTTGACAAAAATCTGCATG 5042 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314704832452481