Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anolis_20carolinensis_20[refseq_20GCF_5F000090745.1_202011-01-10] 6,457 sequences; 1,799,143,587 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq4 118 1e-21 >seq4 Length=156502444 Score = 118 bits (130), Expect = 1e-21 Identities = 122/159 (77%), Gaps = 2/159 (1%) Strand=Plus/Plus Query 34572 CTCTG--ATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGA 34629 ||||| ||||| | ||||| ||||| | |||||||| ||||| || | ||||| || Sbjct 39524604 CTCTGCAATGGCATTACCCCCTTGCCATGCTCTCTGCCAGTTCTATGTTGTAAATGGTGA 39524663 Query 34630 GCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACAT 34689 || || |||||| | ||||| || || ||||| ||||| ||||| || || |||||||| Sbjct 39524664 ACTCTCTTGCCAGTTGTATCAGCGTTCTGGAGATATGGGATTAGGAGTACCCTTCAACAT 39524723 Query 34690 TGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGT 34728 ||| || ||| | ||||| || | ||||| |||||||| Sbjct 39524724 TGCCAGCTACTCACTGCTAACTTCAATGATTGCTCATGT 39524762 Score = 118 bits (130), Expect = 1e-21 Identities = 122/159 (77%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 6617 ACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAAC 6676 |||||||| ||||| | || ||||| | ||| || ||||||||||| || || ||||| Sbjct 39524762 ACATGAGCAATCATTGAAGTTAGCAGTGAGTAGCTGGCAATGTTGAAGGGTACTCCTAAT 39524703 Query 6677 CCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAAT 6736 ||||| ||||| || || ||||| | |||||| || || || ||||| | || ||||| Sbjct 39524702 CCCATATCTCCAGAACGCTGATACAACTGGCAAGAGAGTTCACCATTTACAACATAGAAC 39524643 Query 6737 TGGCAGAGGGTGTGGCACGGGGGGAGCGCCAT--CAGAG 6773 |||||||| | ||||| ||||| | ||||| ||||| Sbjct 39524642 TGGCAGAGAGCATGGCAAGGGGGTAATGCCATTGCAGAG 39524604 Score = 91.5 bits (100), Expect = 1e-13 Identities = 112/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 34295 ACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTCGA 34354 ||||| | || ||||| || || ||||| || |||||||| || | || ||||| Sbjct 39521453 ACGAATGCAAAAGAGCTTTCTACCAAAGGGGTTAAAATCTGGGAAGCCAATGGCTCTCGC 39521512 Query 34355 GACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTAC 34414 | || | ||| ||| || |||| ||| | ||||| || ||||||||||| || || Sbjct 39521513 CAGTTCTTAGACCAGCAAGGATTCCTTTCTAGAGAGGAAGGAGACTTGGGCCCAGTTTAT 39521572 Query 34415 GGGTTCCAGTGGAGACACTTTGGGGCGGAGTAT 34447 || |||||||||||||| ||||| || || ||| Sbjct 39521573 GGTTTCCAGTGGAGACATTTTGGAGCTGAATAT 39521605 Score = 91.5 bits (100), Expect = 1e-13 Identities = 112/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 6898 ATACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTC 6957 ||| || || ||||| |||||||||||||| || || || ||||||||||| || ||||| Sbjct 39521605 ATATTCAGCTCCAAAATGTCTCCACTGGAAACCATAAACTGGGCCCAAGTCTCCTTCCTC 39521546 Query 6958 CCGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTT 7017 | ||| |||| || ||| ||| | || | ||||| || | || |||||||| || Sbjct 39521545 TCTAGAAAGGAATCCTTGCTGGTCTAAGAACTGGCGAGAGCCATTGGCTTCCCAGATTTT 39521486 Query 7018 CACCCCCCGGGACGAGAGCTCCTTGGTGTTCGT 7050 ||||| || || ||||| || | ||||| Sbjct 39521485 AACCCCTTTGGTAGAAAGCTCTTTTGCATTCGT 39521453 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448226219621040