Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anolis_20carolinensis_20[refseq_20GCF_5F000090745.1_202011-01-10] 6,457 sequences; 1,799,143,587 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq3801 158 3e-33 seq8 152 1e-31 seq14 96.9 8e-15 seq6 87.8 4e-12 >seq3801 Length=8881 Score = 158 bits (174), Expect = 3e-33 Identities = 167/219 (76%), Gaps = 6/219 (3%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||||||||||||||||||||| |||||||| || || | ||| || | |||||| Sbjct 5514 AGCACAAGGTGAAGAGTGGACTCTTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCATCT 5573 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||| ||||| |||||||| | | || ||||| || || | || || ||||| Sbjct 5574 TCAAGCTGTTTGCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCT 5633 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTT---TCAACCTCGAGAGTGATC 211079 |||||||| || || || || ||||||||| ||| || ||||| |||||||| Sbjct 5634 TGGATCTTGGCCTTGACATTCTCAATGGTGTCA---CTTGGCTCCACCTCTAGAGTGATG 5690 Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTTA 211118 ||||| || || | ||||| ||||| | |||||||||| Sbjct 5691 GTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCATTTTA 5729 Score = 154 bits (170), Expect = 3e-32 Identities = 165/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 210897 AGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTT 210956 || || ||||||||||| || || |||||||| ||||| || || || | |||||| | Sbjct 4596 AGCCTCAGGACAAGGTGGAGGGTTGACTCTTTCTGGATATTGTAGTCTGAAAGGGTACGG 4655 Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016 |||||||| |||||||| || ||||| || || | ||| || || ||||| | ||||| Sbjct 4656 CCATCTTCAAGCTGCTTCCCGGCGAAAATGAGCCTTTGCTGATCTGGAGGGATGCCTTCT 4715 Query 211017 TTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTG 211076 ||||| ||||| || || ||||| || ||||||||| | ||||| ||||||||| Sbjct 4716 TTGTCTTGGATTTTCGCCTTGACGTTCTCAATGGTGTCACTGGGCTCAACTTCGAGAGTG 4775 Query 211077 ATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| || | ||||| || || | |||||| Sbjct 4776 ATGGTTTTTCCAGTCAAGGTCTTCACGAAAATCTGCAT 4813 Score = 152 bits (168), Expect = 1e-31 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || |||||||| || |||||||| || || | ||| || | |||||| Sbjct 3690 AGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCATCT 3749 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| || || ||||| || | || ||||| || || | ||||||||||| Sbjct 3750 TCGAGCTGCTTCCCGGCAAAGATGAGCCTCTGCTGGTCTGGGGGGATGCCTTCCTTGTCT 3809 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||| || |||||||| || |||||||| | || || ||||||||||| ||| Sbjct 3810 TGGATTTTCGCCTTCACGTTCTCAATGGTGTCGCTGGGCTCGACTTCGAGAGTGATGGTC 3869 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| ||||| ||||| | |||||| Sbjct 3870 TTGCCGGTGAGGGTCTTCACAAAAATCTGCAT 3901 Score = 152 bits (168), Expect = 1e-31 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||||||||| |||||||| || || |||||||||||||| | || || | |||||| Sbjct 4146 AGGACAAGGTGGAGAGTGGATTCCTTCTGGATGTTATAATCTGACAGAGTGCGGCCATCT 4205 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| || ||||| || | | ||| || || ||||| | || || ||||| Sbjct 4206 TCAAGCTGCTTCCCGGCGAAAATCAACCTTTGCTGATCTGGAGGGATGCCCTCTTTGTCT 4265 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||| || || || || || ||||||||| ||| || ||||||||||| ||| Sbjct 4266 TGGATTTTCGCCTTAACATTCTCAATGGTGTCACTTGGTTCCACTTCGAGAGTGATGGTC 4325 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| ||||| ||||| | |||||| Sbjct 4326 TTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 4357 Score = 141 bits (156), Expect = 2e-28 Identities = 161/215 (75%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||| || |||||||||||||| |||||||| ||||| | || || | |||||| Sbjct 5286 AGCACAAGATGGAGAGTGGACTCTTTCTGGATGTTGTAATCTGAGAGAGTGCGGCCATCT 5345 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||| ||||| |||||||| | | || ||||| || || | ||||| ||||| Sbjct 5346 TCAAGCTGTTTGCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGGATGCCTTCTTTGTCT 5405 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCT---TTCAACCTCGAGAGTGATC 211079 |||||||| || |||||||| || ||||| ||| ||||||||| || ||||| Sbjct 5406 TGGATCTTGGCCTTGACGTTTTCAATAGTGTC---GCTTGGTTCAACCTCCAGGGTGATG 5462 Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || || | || || || || | |||||| Sbjct 5463 GTCTTGCCAGTCAAGGTTTTCACGAAAATCTGCAT 5497 Score = 140 bits (154), Expect = 8e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || |||||||| || || |||||||| |||||||||||||| | || || | |||||| Sbjct 5058 AGCACAAGGTGGAGGGTTGACTCTTTCTGGATGTTATAATCTGACAGAGTACGGCCATCT 5117 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || || ||||| || ||||| || | | || ||||| || || | || || ||||| Sbjct 5118 TCAAGTTGCTTCCCGGCGAAAATCAACCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCT 5177 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || |||||||| || |||||| | ||| ||||| ||||| || || Sbjct 5178 TGGATCTTGGCCTTGACGTTTTCAATAGTGTCACTGGGTTCCACCTCTAGAGTAATGGTT 5237 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| ||||| | |||||| Sbjct 5238 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 5269 Score = 134 bits (148), Expect = 3e-26 Identities = 165/224 (74%), Gaps = 6/224 (3%) Strand=Plus/Plus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 || || | ||| || | ||| |||||||| ||||| |||||||| || || | || || Sbjct 4365 CGGAGACGTAGCACTAAGTGGAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGAGTA 4424 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | |||||||| ||||| ||||| || || || | | |||||||| || || | || Sbjct 4425 CGGCCATCTTCAAGCTGTTTGCCGGCAAAAATCAATCTCTGTTGGTCTGGCGGGATGCCC 4484 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTT---TCAACCTCG 211070 || ||||| ||||| ||| |||||| || || |||||||| |||| || || ||| Sbjct 4485 TCTTTGTCTTGGATTTTTGCTTTCACATTCTCAATGGTGTC---GCTTGGTTCCACTTCG 4541 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||||||| || ||||| || || ||||| ||||| | ||||| Sbjct 4542 AGAGTGATGGTTTTTCCAGTCAGGGTCTTCACAAAGATTTGCAT 4585 Score = 131 bits (144), Expect = 4e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||| || |||||||| ||||| ||||| || || || | || || | |||||| Sbjct 3918 AGTACAAGATGGAGAGTGGATTCTTTCTGGATATTGTAGTCGGAGAGAGTGCGGCCATCT 3977 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| || ||||| || | | || ||||| ||||||| ||||| ||||| Sbjct 3978 TCAAGCTGCTTCCCGGCGAAAATCAATCTCTGCTGGTCTGGAGGAATGCCTTCTTTGTCT 4037 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||| || || ||||| || ||||||||| || || ||||||||||| || Sbjct 4038 TGGATTTTGGCCTTGACGTTCTCAATGGTGTCACTCGGCTCGACTTCGAGAGTGATGGTT 4097 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || | || || ||||| | |||||| Sbjct 4098 TTTCCAGTCAAGGTTTTGACAAAGATCTGCAT 4129 >seq8 Length=3271537 Score = 152 bits (168), Expect = 1e-31 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210906 ACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCC 210965 || ||||| | |||||||| || ||||| || || || | ||| || | ||||||||| Sbjct 1336489 ACCAGGTGCAAGGTGGACTCCTTCTGGATATTGTAGTCAGAAAGAGTGCGGCCATCTTCC 1336430 Query 210966 AGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGG 211025 |||||||| || || ||||| || | || |||||||| || | ||||| || |||||| Sbjct 1336429 AGCTGCTTCCCGGCAAAGATGAGCCTCTGCTGGTCAGGCGGGATGCCTTCTTTCTCCTGG 1336370 Query 211026 ATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTT 211085 ||||| ||||| || || |||||||| | || ||||| || ||||| |||||| Sbjct 1336369 ATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTT 1336310 Query 211086 CCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || || ||||| ||||| ||||||||||| Sbjct 1336309 CCTGTCAGGGTCTTCACAAAAACCTGCATTTT 1336278 >seq14 Length=14352415 Score = 96.9 bits (106), Expect = 8e-15 Identities = 133/186 (72%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| || ||||||||||| | |||||| || || | || || ||||| Sbjct 9651892 AGCACCAAGTGGAGGGTGGACTCTTTCTAGATGTTGTAGTCTGAGAGAGTGTGCCCATCC 9651951 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| ||||| ||||| || | || ||||| ||||| | ||||| |||||| Sbjct 9651952 TCCAGCTGCTTCCCTGCAAAGATTAGATGCTGCTGGTCGGGAGGGATCCCTTCTTTGTCC 9652011 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||| || || || || || ||||||| | || ||||| | ||||| || Sbjct 9652012 TGGATTTTGGCCTTGACATTCTCAGTGGTGTCGTTGGGCTCCACCTCCAAGGTGATGGTT 9652071 Query 211083 TTTCCC 211088 || ||| Sbjct 9652072 TTGCCC 9652077 >seq6 Length=80741955 Score = 87.8 bits (96), Expect = 4e-12 Identities = 144/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTG 210970 ||| || |||||| ||| ||||| || || || | || || || || |||||||| Sbjct 46145042 GTGGAGGGTGGACGTTTTCTGGATATTGTAGTCTGAGAGAGTGTGCCCGTCCTCCAGCTG 46145101 Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 || ||||| ||||| || | | |||| ||||| | ||||| ||||||||||| || Sbjct 46145102 CTAACCTGCAAAGATCAGACACTACTGGTTGGGAGGGATCCCTTCTTTGTCCTGGAT-TT 46145160 Query 211031 TTGT-TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCG 211089 | || || | ||| || | ||||||| | || || || | || | || || |||| Sbjct 46145161 TGGTCTTGATGTTCTCAACGGTGTCACTGGGCTCCACGTCCAACGTACTTGTTTTGCCCG 46145220 Query 211090 TGAGAGTCTTTACAAACACCTGCAT 211114 | || ||||| ||||| | |||||| Sbjct 46145221 TCAGGGTCTTCACAAAGATCTGCAT 46145245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159056102992805