Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anolis_20carolinensis_20[refseq_20GCF_5F000090745.1_202011-01-10] 6,457 sequences; 1,799,143,587 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq3801 111 1e-19 seq6 98.7 9e-16 >seq3801 Length=8881 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || |||||| | | |||| ||| || || || ||| ||||| || || || || || Sbjct 4355 CATGCCTCCCCGGAGACGTAGCACTAAGTGGAGAGTGGATTCTTTCTGGATGTTGTAGTC 4414 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGT 39173 || || || || | || |||||||||||||| ||||| || | | ||| ||||| | Sbjct 4415 GGACAGAGTACGGCCATCTTCAAGCTGTTTGCCGGCAAAAATCAATCTCTGTTGGTCTGG 4474 Query 39174 GGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTC 39233 || | || ||||||||| |||||| ||| | || | | || ||||| | || Sbjct 4475 CGGGATGCCCTCTTTGTCTTGGATTTTTGCTTTCACATTCTCAATGGTGTCGCTTGGTTC 4534 Query 39234 CACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||| || | ||||| ||||||| ||||| || || |||||||||||||| Sbjct 4535 CACTTCGAGAGTGATGGTTTTTCCAGTCAGGGTCTTCACAAAGATTTGCAT 4585 Score = 100 bits (110), Expect = 2e-16 Identities = 162/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 ||||| || || || | ||| | || || ||| |||||| || || || || |||| | Sbjct 5499 CCTCCCCTCAAACGCAGCACAAGGTGAAGAGTGGACTCTTTCTGGATGTTGTAGTCGGAA 5558 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || || | || |||||||||||||| || || || | | ||||||||| | ||| Sbjct 5559 AGAGTGCGGCCATCTTCAAGCTGTTTGCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGG 5618 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | || ||||||||| ||| || |||| || | | || || || | |||||| Sbjct 5619 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTTGGCTCCACC 5678 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTTAC 39290 || | ||||| | || || |||| || || |||||||| ||||| || || Sbjct 5679 TCTAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCATTTTAAC 5731 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || |||||| || | || | ||| | ||| || ||| |||||| || || || ||||| Sbjct 5267 CATGCCTCCCCTGAGCCGCAGCACAAGATGGAGAGTGGACTCTTTCTGGATGTTGTAATC 5326 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGT 39173 | || || || | || |||||||||||||| || || || | | ||||||||| | Sbjct 5327 TGAGAGAGTGCGGCCATCTTCAAGCTGTTTGCCGGCGAAGATCAACCTCTGCTGGTCTGG 5386 Query 39174 GGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTC 39233 ||| | || |||||||| ||| || |||| | | | || ||||| | || Sbjct 5387 GGGGATGCCTTCTTTGTCTTGGATCTTGGCCTTGACGTTTTCAATAGTGTCGCTTGGTTC 5446 Query 39234 CACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || |||| ||||| | || || |||| ||||| || || || ||||| Sbjct 5447 AACCTCCAGGGTGATGGTCTTGCCAGTCAAGGTTTTCACGAAAATCTGCAT 5497 >seq6 Length=80741955 Score = 98.7 bits (108), Expect = 9e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 39073 AACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCA 39132 |||||||| || || ||| | ||| || ||||| || || | || || | |||| Sbjct 46145034 AACACCAAGTGGAGGGTGGACGTTTTCTGGATATTGTAGTCTGAGAGAGTGTGCCCGTCC 46145093 Query 39133 TCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCC 39192 || ||||| | || ||||| || |||| || ||||| || || | | ||||||||| Sbjct 46145094 TCCAGCTGCTAACCTGCAAAGATCAGACACTACTGGTTGGGAGGGATCCCTTCTTTGTCC 46145153 Query 39193 ATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTT 39252 |||||| |||| || | || || || || | ||||||||||| ||| | || Sbjct 46145154 TGGATTTTGGTCTTGATGTTCTCAACGGTGTCACTGGGCTCCACGTCCAACGTACTTGTT 46145213 Query 39253 TTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || |||||||| || || |||||||| ||||| Sbjct 46145214 TTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 46145245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429511797043241