Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anolis_20carolinensis_20[refseq_20GCF_5F000090745.1_202011-01-10] 6,457 sequences; 1,799,143,587 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq3801 154 4e-32 seq8 129 1e-24 seq6457 122 2e-22 seq2028 122 2e-22 seq14 107 5e-18 >seq3801 Length=8881 Score = 154 bits (170), Expect = 4e-32 Identities = 153/198 (77%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| || | |||||| ||||||||||| |||| |||||| |||| | ||| | ||||| Sbjct 4829 CAGCACTAAGTGGAGGGTGGATTCTTTCTGGATATTGTAGTCGGAGAGAGTACGGCCATC 4888 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| ||||||||||| ||||| || | | ||| || || || || || ||||| ||||| Sbjct 4889 TTCAAGCTGCTTCCCGGCGAAAATCAACCTTTGCTGATCTGGGGGGATGCCTTCTTTGTC 4948 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 ||||||||| ||| || ||| |||||||| | |||||| |||| ||||| || Sbjct 4949 TTGGATCTTGGCCTTGACGTTTTCAATGGTGTCACTTGGTTCCACCTCTAGTGTGATGGT 5008 Query 225681 CTTGCCCGTCAAAGTTTT 225698 |||||||||||| ||||| Sbjct 5009 CTTGCCCGTCAAGGTTTT 5026 Score = 140 bits (154), Expect = 8e-28 Identities = 161/217 (74%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| |||||||| |||||||| ||||| |||| ||||| |||| | ||| | ||||| Sbjct 5513 CAGCACAAGGTGAAGAGTGGACTCTTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCATC 5572 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| ||||| || || |||||||| | | || ||||| || || || || || ||||| Sbjct 5573 TTCAAGCTGTTTGCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTC 5632 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 ||||||||| ||| ||| || |||||||| | ||||| |||| ||||| || Sbjct 5633 TTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTTGGCTCCACCTCTAGAGTGATGGT 5692 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTTA 225717 |||||| ||||| || || | || | ||||||||| Sbjct 5693 CTTGCCAGTCAAGGTCTTCACAAAGATCTGCATTTTA 5729 Score = 136 bits (150), Expect = 9e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| ||||| ||||||||||| ||||| |||| |||||||| | | ||| | ||||| Sbjct 5285 CAGCACAAGATGGAGAGTGGACTCTTTCTGGATGTTGTAATCTGAGAGAGTGCGGCCATC 5344 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| ||||| || || |||||||| | | || ||||| || || || ||||| ||||| Sbjct 5345 TTCAAGCTGTTTGCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGGATGCCTTCTTTGTC 5404 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 ||||||||| ||| || ||| || ||||| | ||| || || | ||||| || Sbjct 5405 TTGGATCTTGGCCTTGACGTTTTCAATAGTGTCGCTTGGTTCAACCTCCAGGGTGATGGT 5464 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||| ||||| ||||| | ||| | ||||| Sbjct 5465 CTTGCCAGTCAAGGTTTTCACGAAAATCTGCAT 5497 Score = 134 bits (148), Expect = 3e-26 Identities = 148/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || ||||| ||||||||||||||||| |||| |||||| |||| | ||| | |||||| Sbjct 3918 AGTACAAGATGGAGAGTGGATTCTTTCTGGATATTGTAGTCGGAGAGAGTGCGGCCATCT 3977 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || ||||||||||| ||||| || | || || ||||| || ||||| ||||| |||||| Sbjct 3978 TCAAGCTGCTTCCCGGCGAAAATCAATCTCTGCTGGTCTGGAGGAATGCCTTCTTTGTCT 4037 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 ||||| || ||| || || |||||||| | || || || | ||||| || Sbjct 4038 TGGATTTTGGCCTTGACGTTCTCAATGGTGTCACTCGGCTCGACTTCGAGAGTGATGGTT 4097 Query 225682 TTGCCCGTCAAAGTTTT 225698 || || ||||| ||||| Sbjct 4098 TTTCCAGTCAAGGTTTT 4114 Score = 134 bits (148), Expect = 3e-26 Identities = 143/189 (76%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 |||||||||||||||||||||||| || |||| || ||||| | || ||| | ||||| Sbjct 4145 CAGGACAAGGTGGAGAGTGGATTCCTTCTGGATGTTATAATCTGACAGAGTGCGGCCATC 4204 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| ||||||||||| ||||| || | | ||| || || || || || || || ||||| Sbjct 4205 TTCAAGCTGCTTCCCGGCGAAAATCAACCTTTGCTGATCTGGAGGGATGCCCTCTTTGTC 4264 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||| || ||| ||| || |||||||| | |||||| || | ||||| || Sbjct 4265 TTGGATTTTCGCCTTAACATTCTCAATGGTGTCACTTGGTTCCACTTCGAGAGTGATGGT 4324 Query 225681 CTTGCCCGT 225689 |||||| || Sbjct 4325 CTTGCCAGT 4333 Score = 134 bits (148), Expect = 3e-26 Identities = 159/213 (75%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | |||||||||||||||||| |||| ||||| |||| || ||| | |||||| Sbjct 4374 AGCACTAAGTGGAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGAGTACGGCCATCT 4433 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || ||||| || || || || || | || |||||||| ||||| || || || |||||| Sbjct 4434 TCAAGCTGTTTGCCGGCAAAAATCAATCTCTGTTGGTCTGGCGGGATGCCCTCTTTGTCT 4493 Query 225622 TGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 ||||| |||||| |||||| || |||||||| | |||||| || | ||||| || Sbjct 4494 TGGAT-TTTTGCTTTCACATTCTCAATGGTGTCGCTTGGTTCCACTTCGAGAGTGATGGT 4552 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || |||| || || | || | |||||| Sbjct 4553 TTTTCCAGTCAGGGTCTTCACAAAGATTTGCAT 4585 Score = 127 bits (140), Expect = 5e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 225496 AGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTC 225555 || ||||||||||||||||| || || ||||| |||| |||||| || | | || | Sbjct 4596 AGCCTCAGGACAAGGTGGAGGGTTGACTCTTTCTGGATATTGTAGTCTGAAAGGGTACGG 4655 Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 |||||||| ||||||||||| ||||| || || | ||| || || || || || ||||| Sbjct 4656 CCATCTTCAAGCTGCTTCCCGGCGAAAATGAGCCTTTGCTGATCTGGAGGGATGCCTTCT 4715 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 ||||||||||| || ||| || || |||||||| || || || || | ||| Sbjct 4716 TTGTCTTGGATTTTCGCCTTGACGTTCTCAATGGTGTCACTGGGCTCAACTTCGAGAGTG 4775 Query 225676 ATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || || || ||||| || || | ||| | ||||| Sbjct 4776 ATGGTTTTTCCAGTCAAGGTCTTCACGAAAATCTGCAT 4813 Score = 125 bits (138), Expect = 2e-23 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | ||| || |||||||| ||||| || || |||| ||||| |||| | ||| Sbjct 3681 CGGAGGCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTG 3740 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | |||||||| ||||||||||| || ||||| || | || ||||| || || || ||| Sbjct 3741 CGGCCATCTTCGAGCTGCTTCCCGGCAAAGATGAGCCTCTGCTGGTCTGGGGGGATGCCT 3800 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 |||||||||||||| || |||||| || |||||||| || || || || | Sbjct 3801 TCCTTGTCTTGGATTTTCGCCTTCACGTTCTCAATGGTGTCGCTGGGCTCGACTTCGAGA 3860 Query 225673 GTGATCGTCTTGCCCGT 225689 ||||| |||||||| || Sbjct 3861 GTGATGGTCTTGCCGGT 3877 Score = 120 bits (132), Expect = 7e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| ||||||||||| || || ||||| |||| || ||||| | || ||| | ||||| Sbjct 5057 CAGCACAAGGTGGAGGGTTGACTCTTTCTGGATGTTATAATCTGACAGAGTACGGCCATC 5116 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| || |||||||| ||||| || | | || ||||| || || || || || ||||| Sbjct 5117 TTCAAGTTGCTTCCCGGCGAAAATCAACCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTC 5176 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 ||||||||| ||| || ||| || ||||| || |||||| |||| || || || Sbjct 5177 TTGGATCTTGGCCTTGACGTTTTCAATAGTGTCACTGGGTTCCACCTCTAGAGTAATGGT 5236 Query 225681 CTTGCCCGTCA 225691 ||||| |||| Sbjct 5237 TTTGCCAGTCA 5247 >seq8 Length=3271537 Score = 129 bits (142), Expect = 1e-24 Identities = 161/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 225496 AGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTC 225555 |||| || || ||||| | ||||| || || |||| |||||| || | | ||| | Sbjct 1336498 AGTCGCAAAACCAGGTGCAAGGTGGACTCCTTCTGGATATTGTAGTCAGAAAGAGTGCGG 1336439 Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 |||||||| ||||||||||| || ||||| || | || ||||| ||||| || ||||| Sbjct 1336438 CCATCTTCCAGCTGCTTCCCGGCAAAGATGAGCCTCTGCTGGTCAGGCGGGATGCCTTCT 1336379 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 || || |||||||| ||||||| || |||||||| || ||||| || | ||| Sbjct 1336378 TTCTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTG 1336319 Query 225676 ATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 || ||||| || |||| || || | || || |||||||| Sbjct 1336318 ATGGTCTTTCCTGTCAGGGTCTTCACAAAAACCTGCATTTT 1336278 >seq6457 Length=17223 Score = 122 bits (134), Expect = 2e-22 Identities = 135/180 (75%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 7551 CCAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTAT 7610 |||| |||| ||||| ||| |||| || || || ||||| || || || ||| | ||||| Sbjct 5410 CCAAATTTATAACGTCATTGTTACAGCCCACGCTTTTGTGATAATCTTTTTTATGGTTAT 5469 Query 7611 GCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGA 7670 ||| ||||| || || || || || || ||| | || || ||||||||||| || || || Sbjct 5470 GCCTGTTATAATTGGGGGCTTTGGTAACTGACTAGTACCATTAATGATTGGGGCCCCGGA 5529 Query 7671 TATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATTTCT 7730 || || |||||| | | || || || || |||||| |||||||||| || || |||| Sbjct 5530 CATAGCATTTCCACGAATAAATAACATGAGCTTTTGACTACTACCGCCATCATTTCTTCT 5589 >seq2028 Length=18018 Score = 122 bits (134), Expect = 2e-22 Identities = 135/180 (75%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 7551 CCAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTAT 7610 |||| |||| ||||| ||| |||| || || || ||||| || || || ||| | ||||| Sbjct 10669 CCAAATTTATAACGTCATTGTTACAGCCCACGCTTTTGTGATAATCTTTTTTATGGTTAT 10610 Query 7611 GCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGA 7670 ||| ||||| || || || || || || ||| | || || ||||||||||| || || || Sbjct 10609 GCCTGTTATAATTGGGGGCTTTGGTAACTGACTAGTACCATTAATGATTGGGGCCCCGGA 10550 Query 7671 TATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATTTCT 7730 || || |||||| | | || || || || |||||| |||||||||| || || |||| Sbjct 10549 CATAGCATTTCCACGAATAAATAACATGAGCTTTTGACTACTACCGCCATCATTTCTTCT 10490 >seq14 Length=14352415 Score = 107 bits (118), Expect = 5e-18 Identities = 136/187 (73%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| || | |||||| ||||| ||||| | || ||||| || | | ||| |||||| Sbjct 9651891 CAGCACCAAGTGGAGGGTGGACTCTTTCTAGATGTTGTAGTCTGAGAGAGTGTGCCCATC 9651950 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 || ||||||||||| || ||||| || | || |||||||| || || ||||| ||||| Sbjct 9651951 CTCCAGCTGCTTCCCTGCAAAGATTAGATGCTGCTGGTCGGGAGGGATCCCTTCTTTGTC 9652010 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 ||||| || ||| ||| || ||||||| || ||||| || || ||||| || Sbjct 9652011 CTGGATTTTGGCCTTGACATTCTCAGTGGTGTCGTTGGGCTCCACCTCCAAGGTGATGGT 9652070 Query 225681 CTTGCCC 225687 |||||| Sbjct 9652071 TTTGCCC 9652077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192432541521158