Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anolis_20carolinensis_20[refseq_20GCF_5F000090745.1_202011-01-10] 6,457 sequences; 1,799,143,587 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq1 100 4e-16 seq514 95.1 2e-14 seq4 87.8 2e-12 >seq1 Length=263920458 Score = 100 bits (110), Expect = 4e-16 Identities = 79/95 (83%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 47835 GACATAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCT 47894 ||||| |||||||| | |||||||| || ||||| || || || ||||||||||||||| Sbjct 148002242 GACATCACTCCCATCCTCTGATATTCTCCGACACGCTTTTCAAAGAAATTAGTTTTGCCT 148002301 Query 47895 TCCAATGATATATTTTCCATAAAATCAAATGGATT 47929 |||| ||| ||||| ||||| || ||||| ||||| Sbjct 148002302 TCCAGTGAGATATTCTCCATGAAGTCAAACGGATT 148002336 Score = 98.7 bits (108), Expect = 1e-15 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 ||||||||||| || | ||| || || || ||||| || ||||| || || || ||||| Sbjct 148006013 TCATCTCTACTGATCAGTTCATTGGAGAAAGTGAGTCCAGGCATCAGACCTCGCTTTTTC 148006072 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283 | ||||||||| | || ||||| || |||||||| || |||||||| || ||||| || Sbjct 148006073 AACCAAAATATAGATGCAAAAGAACCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGC 148006131 >seq514 Length=269024 Score = 95.1 bits (104), Expect = 2e-14 Identities = 99/130 (76%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 77733 ATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTA 77792 |||||||| || || || || || ||||| || ||||| || || ||||||||||| | Sbjct 181429 ATCTCGGTGCAGAGGTTGCTGCACTTGATGGTCCCCAGGTTCTGCTGGTTGCTCTTCCTG 181370 Query 77793 TTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATA 77852 ||||| ||||| || || || || ||||||| ||||| ||| |||| || ||||| || Sbjct 181369 TTGCAGGAGTCTTTGTAGAGCATGTACGGAGTGCCGGTCTCAGTCTGGGACTCGATGATG 181310 Query 77853 GATTTCCAGA 77862 | | ||||| Sbjct 181309 GCGTACCAGA 181300 >seq4 Length=156502444 Score = 87.8 bits (96), Expect = 2e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 48163 CTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTT 48222 ||||||| | ||||| | ||| || || || |||||||| ||||| ||||| | ||| | Sbjct 14021239 CTTCATCACGGCTAATAAGTTCATTGGAGAAAGTGAGACCCGGCATCAGTCCTCTTTTCT 14021180 Query 48223 TGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATG 48282 |||||||||| || || || || | ||||| ||||| || ||||| || | ||||| | Sbjct 14021179 TGAGCCAAAAGATAGCTGCAAAGGCACCAGAGAAGAAGATTCCTTCAACCGAGGCAAAAG 14021120 Query 48283 C 48283 | Sbjct 14021119 C 14021119 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694612731544480