Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anolis_20carolinensis_20[refseq_20GCF_5F000090745.1_202011-01-10] 6,457 sequences; 1,799,143,587 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq1 107 3e-18 seq4 87.8 3e-12 seq514 86.0 9e-12 >seq1 Length=263920458 Score = 107 bits (118), Expect = 3e-18 Identities = 97/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 ||||||||||| || | ||| || || || ||||| |||||||| || || |||||||| Sbjct 148006013 TCATCTCTACTGATCAGTTCATTGGAGAAAGTGAGTCCAGGCATCAGACCTCGCTTTTTC 148006072 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 | ||||||||||| || ||||| || |||||||| || |||||||| || || || || Sbjct 148006073 AACCAAAATATAGATGCAAAAGAACCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCT 148006132 Query 46774 AC 46775 || Sbjct 148006133 AC 148006134 Score = 104 bits (114), Expect = 3e-17 Identities = 83/100 (83%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 46319 CTTGTGACATAACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTT 46378 ||| |||||| |||||||| | || ||||| || ||||| || || || |||||||||| Sbjct 148002237 CTTTTGACATCACTCCCATCCTCTGATATTCTCCGACACGCTTTTCAAAGAAATTAGTTT 148002296 Query 46379 TGCCTTCCAATGATATATTTTCCATAAAATCAAACGGATT 46418 ||||||||| ||| ||||| ||||| || ||||||||||| Sbjct 148002297 TGCCTTCCAGTGAGATATTCTCCATGAAGTCAAACGGATT 148002336 >seq4 Length=156502444 Score = 87.8 bits (96), Expect = 3e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 46652 CTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTT 46711 ||||||| | ||||| | ||| || || || ||||| || ||||| ||||| | || | Sbjct 14021239 CTTCATCACGGCTAATAAGTTCATTGGAGAAAGTGAGACCCGGCATCAGTCCTCTTTTCT 14021180 Query 46712 TGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATG 46771 |||||||||| ||||| || || | ||||| ||||| || ||||| || | || || | Sbjct 14021179 TGAGCCAAAAGATAGCTGCAAAGGCACCAGAGAAGAAGATTCCTTCAACCGAGGCAAAAG 14021120 Query 46772 CGACAAGTCTCTCTCC 46787 | || | |||||| || Sbjct 14021119 CAACCACTCTCTCCCC 14021104 >seq514 Length=269024 Score = 86.0 bits (94), Expect = 9e-12 Identities = 97/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 76328 ATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTG 76387 ||||| ||||| || || || |||||||| || || || || || ||||||||||| || Sbjct 181429 ATCTCGGTGCAGAGGTTGCTGCACTTGATGGTCCCCAGGTTCTGCTGGTTGCTCTTCCTG 181370 Query 76388 TTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAATCTGTGATTCGATAATA 76447 || || ||||| || || || | ||||||| || || ||| |||| || ||||| || Sbjct 181369 TTGCAGGAGTCTTTGTAGAGCATGTACGGAGTGCCGGTCTCAGTCTGGGACTCGATGATG 181310 Query 76448 GATTTCCAGA 76457 | | ||||| Sbjct 181309 GCGTACCAGA 181300 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712876857282240