Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anolis_20carolinensis_20[refseq_20GCF_5F000090745.1_202011-01-10] 6,457 sequences; 1,799,143,587 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq3801 149 1e-30 seq8 109 1e-18 >seq3801 Length=8881 Score = 149 bits (164), Expect = 1e-30 Identities = 165/219 (75%), Gaps = 6/219 (3%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || ||||| |||||||| |||||||| ||||||||||| |||| | ||| | |||||| Sbjct 5514 AGCACAAGGTGAAGAGTGGACTCTTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCATCT 5573 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || ||| ||||||||||| | |||||||||||| | | ||| || || || ||| Sbjct 5574 TCAAGCTGTTTGCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCT 5633 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || |||||| |||| | | |||| ||| ||| || || ||||| || Sbjct 5634 TGGATCTTGGCCTTGACATTCTCAATGGTGTC---ACTTGGCTCCACCTCTAGAGTGATG 5690 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTTA 152108 || ||||| || | |||||||| |||| |||||||||| Sbjct 5691 GTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCATTTTA 5729 Score = 134 bits (148), Expect = 3e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || || || || || ||||| || ||||||||||| |||| | ||| | |||||| Sbjct 3690 AGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCATCT 3749 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || |||||||| ||||| |||||||||||||| | | ||| |||||||| ||| Sbjct 3750 TCGAGCTGCTTCCCGGCAAAGATGAGCCTCTGCTGGTCTGGGGGGATGCCTTCCTTGTCT 3809 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || ||||| || || |||| | | |||| ||| ||||| ||||| || || Sbjct 3810 TGGATTTTCGCCTTCACGTTCTCAATGGTGTCGCTGGGCTCGACTTCGAGAGTGATGGTC 3869 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| ||||| |||||||| || | |||||| Sbjct 3870 TTGCCGGTGAGGGTCTTCACAAAAATCTGCAT 3901 Score = 132 bits (146), Expect = 1e-25 Identities = 165/225 (73%), Gaps = 6/225 (3%) Strand=Plus/Plus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 |||||| || |||||||| || || || |||||||| ||||| ||||| || | | || Sbjct 4592 CCTGAGCCTCAGGACAAGGTGGAGGGTTGACTCTTTCTGGATATTGTAGTCTGAAAGGGT 4651 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | |||||||| || ||||||||||| || ||||| ||||| || | | ||| || Sbjct 4652 ACGGCCATCTTCAAGCTGCTTCCCGGCGAAAATGAGCCTTTGCTGATCTGGAGGGATGCC 4711 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTC 152059 ||| || ||||| ||||| ||||| |||| | | |||| ||| ||| ||||| Sbjct 4712 TTCTTTGTCTTGGATTTTCGCCTTGACGTTCTCAATGGTGTC---ACTGGGCTCAACTTC 4768 Query 152060 AAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || ||||| || || | ||||||||||| | |||||| Sbjct 4769 GAGAGTGATGGTTTTTCCAGTCAAGGTCTTCACGAAAATCTGCAT 4813 Score = 123 bits (136), Expect = 6e-23 Identities = 157/215 (73%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 |||||||| || ||||| || || || |||||||| ||||| | | ||| | |||||| Sbjct 4146 AGGACAAGGTGGAGAGTGGATTCCTTCTGGATGTTATAATCTGACAGAGTGCGGCCATCT 4205 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || ||||||||||| || | ||| ||||| || | | ||| || || || ||| Sbjct 4206 TCAAGCTGCTTCCCGGCGAAAATCAACCTTTGCTGATCTGGAGGGATGCCCTCTTTGTCT 4265 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || ||||| || ||| |||| | | |||| ||| || ||||| ||||| || Sbjct 4266 TGGATTTTCGCCTTAACATTCTCAATGGTGTC---ACTTGGTTCCACTTCGAGAGTGATG 4322 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| ||||| |||||||| |||| |||||| Sbjct 4323 GTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 4357 Score = 122 bits (134), Expect = 2e-22 Identities = 160/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 |||||| | || |||||||| ||||| |||||||| |||||||||||||| | | ||| Sbjct 5276 CCTGAGCCGCAGCACAAGATGGAGAGTGGACTCTTTCTGGATGTTGTAATCTGAGAGAGT 5335 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | |||||||| || ||| ||||||||||| | |||||||||||| | | ||| || Sbjct 5336 GCGGCCATCTTCAAGCTGTTTGCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGGATGCC 5395 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAG 152062 ||| || ||||| || || ||||| | || | |||| || || || || Sbjct 5396 TTCTTTGTCTTGGATCTTGGCCTTGACGTTTTCAATAGTGTCGCTTGGTTCAACCTCCAG 5455 Query 152063 AGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || ||||| || | || |||||||| | |||||| Sbjct 5456 GGTGATGGTCTTGCCAGTCAAGGTTTTCACGAAAATCTGCAT 5497 Score = 118 bits (130), Expect = 2e-21 Identities = 156/215 (73%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || |||||||| ||||| || ||||| ||||| ||||| |||| | ||| | |||||| Sbjct 3918 AGTACAAGATGGAGAGTGGATTCTTTCTGGATATTGTAGTCGGAGAGAGTGCGGCCATCT 3977 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || ||||||||||| || | ||||||||||| | | || ||||| || ||| Sbjct 3978 TCAAGCTGCTTCCCGGCGAAAATCAATCTCTGCTGGTCTGGAGGAATGCCTTCTTTGTCT 4037 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || ||||| ||||| |||| | | |||| ||| ||| ||||| ||||| || Sbjct 4038 TGGATTTTGGCCTTGACGTTCTCAATGGTGTC---ACTCGGCTCGACTTCGAGAGTGATG 4094 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || || | || || || |||| |||||| Sbjct 4095 GTTTTTCCAGTCAAGGTTTTGACAAAGATCTGCAT 4129 Score = 118 bits (130), Expect = 2e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 151902 TGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTT 151961 || ||||| || ||||| ||||||||||| |||| | ||| | |||||||| || | Sbjct 4383 TGGAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGAGTACGGCCATCTTCAAGCTGT 4442 Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021 || ||||| || || | ||||| ||||| | || ||| || || || ||||| |||||| Sbjct 4443 TTGCCGGCAAAAATCAATCTCTGTTGGTCTGGCGGGATGCCCTCTTTGTCTTGGATTTTT 4502 Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081 ||| ||| |||| | | |||| || ||||| ||||| || ||||| || || Sbjct 4503 GCTTTCACATTCTCAATGGTGTCGCTTGGTTCCACTTCGAGAGTGATGGTTTTTCCAGTC 4562 Query 152082 AGAGTCTTCACGAAGACCTGCAT 152104 || |||||||| |||| ||||| Sbjct 4563 AGGGTCTTCACAAAGATTTGCAT 4585 Score = 118 bits (130), Expect = 2e-21 Identities = 156/215 (73%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || ||||| || || || |||||||| |||||||| ||||| | | ||| | |||||| Sbjct 5058 AGCACAAGGTGGAGGGTTGACTCTTTCTGGATGTTATAATCTGACAGAGTACGGCCATCT 5117 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || ||||||||||| || | |||||||||||| | | ||| || || || ||| Sbjct 5118 TCAAGTTGCTTCCCGGCGAAAATCAACCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCT 5177 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || ||||| | || | |||| ||| || || || |||||||| Sbjct 5178 TGGATCTTGGCCTTGACGTTTTCAATAGTGTC---ACTGGGTTCCACCTCTAGAGTAATG 5234 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||||||| || || |||||||| |||| |||||| Sbjct 5235 GTTTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 5269 >seq8 Length=3271537 Score = 109 bits (120), Expect = 1e-18 Identities = 144/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCG 151967 || ||||| || ||||| ||||| || | | ||| | |||||||| || |||||| Sbjct 1336477 GTGGACTCCTTCTGGATATTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTCCCG 1336418 Query 151968 GCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTG 152027 || ||||| |||||||||||||| | || ||| ||||| || || || || || || Sbjct 1336417 GCAAAGATGAGCCTCTGCTGGTCAGGCGGGATGCCTTCTTTCTCCTGGATCTTGGCCTTC 1336358 Query 152028 ACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTC 152087 ||| |||| | | |||| ||| || || || || || || || || || || ||| Sbjct 1336357 ACATTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTTCCTGTCAGGGTC 1336298 Query 152088 TTCACGAAGACCTGCATTTT 152107 ||||| || ||||||||||| Sbjct 1336297 TTCACAAAAACCTGCATTTT 1336278 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153725344044647