Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anolis_20carolinensis_20[refseq_20GCF_5F000090745.1_202011-01-10] 6,457 sequences; 1,799,143,587 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq1614 147 3e-30 seq24 140 5e-28 >seq1614 Length=25508 Score = 147 bits (162), Expect = 3e-30 Identities = 177/241 (73%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 8310 CCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATCCCGAACCCCA 8369 |||||| ||||| ||||| || | | | || | | |||| || | || ||| || Sbjct 6247 CCTTGAGGTTGCGGCAGACCAGGTCCCGGAACGTGGTGGTCTTCACCAGCCGGAAGCCGG 6306 Query 8370 CGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATGA 8429 || ||||||||||||||||||||||||||| | |||||||||||| |||| ||| | Sbjct 6307 TCTCCCCGCCGAAGGTGCTGGGCTTCCAGTACTCGGGGGAGCAGATGGGGTTCCCCAGCA 6366 Query 8430 GGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTTGG 8489 |||| || |||||||| || ||||| | ||| | |||||||| || |||||||| | Sbjct 6367 GGCCCTTCAGGGAGAAGGGCGCCCCGATCTCCACCATGCTCTCCCCAAAGATGGCCCGCG 6426 Query 8490 GACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCTCCGTAAA 8549 | | | ||| ||||||| | || | ||| | |||||| || |||| ||| ||||| | Sbjct 6427 GCTGCGCCTTCTCCACCAGCATCCCCGGGTAGAACTCCACTGCGTCGATGTCGCCGTACA 6486 Query 8550 G 8550 | Sbjct 6487 G 6487 Score = 118 bits (130), Expect = 2e-21 Identities = 181/257 (70%), Gaps = 6/257 (2%) Strand=Plus/Plus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || || || | |||||| | | ||||||||| || |||||||| ||| | || || Sbjct 9097 TCACCAATGAGGATGAGCCTGGCGGTCTGGAAGAGCTGCTCGTCGTCCCAGGCGGGGTGC 9156 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 || | || || | || |||| |||||| || | |||||||| |||||| ||||| Sbjct 9157 TCGTCCTTGAGGAGGGCGGCGACCCGGTTGTGCTCGCGCAGCCAGATGGTGGCGAACATC 9216 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGC 9411 ||||| || || | ||||||||| |||| || || || ||||| || | |||||| Sbjct 9217 ATGAGTCCCGGGAGCAGGCCAAAGACCTCCTGCCCCACCGCCAGGCG---GGCCTCGGGC 9273 Query 9412 ---ACTTCGGGAGGATAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATT 9468 || | | || ||||||||||||||| || | || | |||||||| || ||||| Sbjct 9274 GGGACGTGCGCCGGGTAGATCATGTGCACCGGGGCCTCCTCCACCGAGGGCGGGTACATC 9333 Query 9469 TCACCGTCAATCATCTG 9485 || || | | |||||| Sbjct 9334 TCCCCCTTGACCATCTG 9350 Score = 89.7 bits (98), Expect = 7e-13 Identities = 120/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 9070 TCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATACGATTTTGG 9129 ||||||||||| | |||||||| || | | ||| ||||| || || || ||| Sbjct 8216 TCCGGCATGAGCGGGTGCCAGTGGTAGAGCTGGTTGAACTCCACCGCAATGCGGTTGTGG 8275 Query 9130 TACTGGAACGAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAGCTGAAAATGGTAGCCG 9189 ||||||||| | ||||||||||| || || | ||| |||||| | | ||||||| Sbjct 8276 TACTGGAACTGCGCCCCAAAGAGCAGCTCCGGGTCGAACTTCAGCTGCAGGTAGTAGCCG 8335 Query 9190 CTGAGCTGCTGAACGTATTGCGTCACGATAATGTTGATGGTTTCCCC 9236 ||||| ||||| ||||| | | | || || |||||||| ||||| Sbjct 8336 CTGAGGTGCTGGACGTAGTCCTCGATGACGATTTTGATGGTCTCCCC 8382 >seq24 Length=4717188 Score = 140 bits (154), Expect = 5e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 8375 CCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCT 8434 || || || ||||| |||||||||||| | || ||||| || | || ||||||| ||| Sbjct 2267304 CCCCCAAAAGTGCTTGGCTTCCAGTACTCAGGAGAGCAAATTGCATTTCCCATGAGTCCT 2267245 Query 8435 TTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGG 8494 || ||||||||||| || || | || | ||| ||||||| |||||||| ||||| Sbjct 2267244 TTCAGGGAGAACGGTGCTCCAAGTTCAATCATGGTCTCACCAAAGATGGCTCCAGGACGT 2267185 Query 8495 GGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCTCCGTAAAGGGCC 8554 || ||||| || || | | | |||||||||| || |||| |||||| ||||| | Sbjct 2267184 GGTTTTTCTACTAAAAGAGCTGGATACAGCTCCATCGCATCGATGTCTCCATAAAGCTCT 2267125 Query 8555 CTGAGTTCGGCAGCGATCTCCTTTTCTCCTGT 8586 ||||||| ||||| || || || |||||||| Sbjct 2267124 TTGAGTTCAGCAGCCATTTCTTTCTCTCCTGT 2267093 Score = 138 bits (152), Expect = 2e-27 Identities = 181/251 (72%), Gaps = 0/251 (0%) Strand=Plus/Minus Query 9235 CCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCT 9294 || || | ||| || | || || |||||||| || || || ||||||||| || || Sbjct 2264374 CCTATCAAGATCAGCCTGGTTGTTTGGAACAGCTGTTCATCGTCCCATTCTGGGTGCTCC 2264315 Query 9295 TGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATG 9354 ||| ||||| || ||||||| ||||||||||| ||||| | || || |||||||| Sbjct 2264314 CCTTTAAGAACGTCACACACCCGGTTGTGTTCCCGTAGCCACAATGTCGCATACATCATC 2264255 Query 9355 AGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACT 9414 || || || |||| ||||| ||||||| || ||| | | || || || || | Sbjct 2264254 AGTCCTGGAACCAAACCAAAGACCTCTTGCCCTACACAAAATCTCAAGTGCTCAGGGATA 2264195 Query 9415 TCGGGAGGATAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCG 9474 | ||| ||||||||||| | |||| |||||| || | ||| ||||||||||| || Sbjct 2264194 TGGGGTGGATAGATCATTTCTGCCTGAGTGTCTTTCACTGTGGGTGGATACATTTCTCCA 2264135 Query 9475 TCAATCATCTG 9485 || |||||||| Sbjct 2264134 TCGATCATCTG 2264124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716818939081280