Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anolis_20carolinensis_20[refseq_20GCF_5F000090745.1_202011-01-10] 6,457 sequences; 1,799,143,587 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq3801 161 2e-34 seq14 109 1e-18 >seq3801 Length=8881 Score = 161 bits (178), Expect = 2e-34 Identities = 169/220 (77%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || ||||||||||| || | || |||||||| ||||| ||||| || || || ||| Sbjct 4810 CAGATTTTCGTGAAGACCTTGACTGGAAAAACCATCACTCTCGAAGTTGA--GCCCAGTG 4753 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||||||||| || || || ||||||||||| |||||||| || |||| Sbjct 4752 ACACCATTGAGAACGTCAAGGCGAAAATCCAAGACAAAGAAGGCATCCCTCCAGATCAGC 4693 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 || | || || |||||||| || ||||| |||||||| | || ||| | || || || Sbjct 4692 AAAGGCTCATTTTCGCCGGGAAGCAGCTTGAAGATGGCCGTACCCTTTCAGACTACAATA 4633 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141 |||| ||||| ||||| || || ||||| |||| ||||| Sbjct 4632 TCCAGAAAGAGTCAACCCTCCACCTTGTCCTGAGGCTCAG 4593 Score = 161 bits (178), Expect = 2e-34 Identities = 169/221 (76%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA---AGCTCA 177980 || |||||||||||||| | || || || || |||||||| ||||| ||| ||| Sbjct 5494 CAGATTTTCGTGAAAACCTTGACTGGCAAGACCATCACCCTGGAGGTTGAACCAAGC--- 5438 Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 ||||| || || |||||||| ||||| || ||||||||||| ||||| || |||||| Sbjct 5437 GACACTATTGAAAACGTCAAGGCCAAGATCCAAGACAAAGAAGGCATCCCCCCAGACCAG 5378 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 || | | ||||||||||| |||||||| |||||||| | ||||| | ||||| ||| Sbjct 5377 CAGAGGTTGATCTTCGCCGGCAAACAGCTTGAAGATGGCCGCACTCTCTCAGATTACAAC 5318 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141 |||| ||||| || || || |||||||| || | ||||| Sbjct 5317 ATCCAGAAAGAGTCCACTCTCCATCTTGTGCTGCGGCTCAG 5277 Score = 147 bits (162), Expect = 5e-30 Identities = 166/220 (75%), Gaps = 7/220 (3%) Strand=Plus/Minus Query 177912 GTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTG 177971 |||||||||| | || || ||||| || | || || || || ||||| || |||||| Sbjct 5731 GTTAAAATGC---AGATCTTTGTGAAGACCTTGACTGGCAAGACCATCACTCTAGAGGTG 5675 Query 177972 GAAAGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCC 178029 || || || ||||||| ||||| ||||| ||||| || |||||||| || |||| Sbjct 5674 GA--GCCAAGTGACACCATTGAGAATGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCC 5617 Query 178030 CTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG 178089 | || |||||||| | | ||||||||||| |||||||| |||||||| | |||||| Sbjct 5616 CCCCAGACCAGCAGAGGTTGATCTTCGCCGGCAAACAGCTTGAAGATGGCCGCACTCTTT 5557 Query 178090 CCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || ||| |||| ||||| || || || || ||||| Sbjct 5556 CCGACTACAACATCCAGAAAGAGTCCACTCTTCACCTTGT 5517 Score = 145 bits (160), Expect = 2e-29 Identities = 158/208 (76%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || || ||||| | || |||||||| ||||| ||||| || || || || Sbjct 4126 CAGATCTTTGTCAAAACCTTGACTGGAAAAACCATCACTCTCGAAGTCGA--GCCGAGTG 4069 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||||||||| || || || ||||||||||| || ||||| ||||||| Sbjct 4068 ACACCATTGAGAACGTCAAGGCCAAAATCCAAGACAAAGAAGGCATTCCTCCAGACCAGC 4009 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | || | || |||||||| || ||||| |||||||| | ||||| |||| || || Sbjct 4008 AGAGATTGATTTTCGCCGGGAAGCAGCTTGAAGATGGCCGCACTCTCTCCGACTACAATA 3949 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| |||||||| || || |||||||| Sbjct 3948 TCCAGAAAGAATCCACTCTCCATCTTGT 3921 Score = 140 bits (154), Expect = 8e-28 Identities = 157/208 (75%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || ||||| ||||| || ||||| || || || ||||| ||||| || || || ||| Sbjct 3898 CAGATTTTTGTGAAGACCCTCACCGGCAAGACCATCACTCTCGAAGTCGA--GCCCAGCG 3841 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| |||||||| || || || || ||||| ||||| ||||| || ||||||| Sbjct 3840 ACACCATTGAGAACGTGAAGGCGAAAATCCAAGACAAGGAAGGCATCCCCCCAGACCAGC 3781 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| ||||| || |||||||||||||| | |||||| |||| || ||| Sbjct 3780 AGAGGCTCATCTTTGCCGGGAAGCAGCTCGAAGATGGCCGCACTCTTTCCGACTACAACA 3721 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || || || || || || || || Sbjct 3720 TCCAGAAGGAGTCCACCCTCCACCTGGT 3693 Score = 132 bits (146), Expect = 1e-25 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| || ||||| | || || || || ||||| || ||||||||| ||| Sbjct 5038 CAGATTTTTGTCAAAACCTTGACGGGCAAGACCATCACACTAGAGGTGGAACCAAGTGAC 4979 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || |||||||| ||||| || ||||||||||| ||||| || || |||||| Sbjct 4978 ACCATTGAAAACGTCAAGGCCAAGATCCAAGACAAAGAAGGCATCCCCCCAGATCAGCAA 4919 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | | || |||||||| || ||||| |||||||| | ||||| |||| || || || Sbjct 4918 AGGTTGATTTTCGCCGGGAAGCAGCTTGAAGATGGCCGTACTCTCTCCGACTACAATATC 4859 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141 || |||||||| || || || | || || | ||||| Sbjct 4858 CAGAAAGAATCCACCCTCCACTTAGTGCTGCGGCTCAG 4821 >seq14 Length=14352415 Score = 109 bits (120), Expect = 1e-18 Identities = 136/183 (74%), Gaps = 5/183 (3%) Strand=Plus/Minus Query 177948 GGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--GACACCATCGAGAACGTCAAACAAA 178005 || ||||| |||||| | |||||||| || || ||||||| ||||| ||||| | Sbjct 9652076 GGCAAAACCATCACCTTGGAGGTGGA--GCCCAACGACACCACTGAGAATGTCAAGGCCA 9652019 Query 178006 AGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAAC 178065 | || |||||||||||||| |||||||| |||||||| | || ||||| || || || | Sbjct 9652018 AAATCCAGGACAAAGAAGGGATCCCTCCCGACCAGCAGCATCTAATCTTTGCAGGGAAGC 9651959 Query 178066 AGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATC 178125 |||| || ||||| ||||| | || || ||| || | ||||| || || || || | Sbjct 9651958 AGCTGGAGGATGGGCACACTCTCTCAGACTACAACATCTAGAAAGAGTCCACCCTCCA-C 9651900 Query 178126 TTG 178128 ||| Sbjct 9651899 TTG 9651897 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203631614941658