Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anolis_20carolinensis_20[refseq_20GCF_5F000090745.1_202011-01-10] 6,457 sequences; 1,799,143,587 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq3801 132 4e-26 seq8 111 1e-19 >seq3801 Length=8881 Score = 132 bits (146), Expect = 4e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 41632 ACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTC 41691 || |||||| || || || | |||||| || || ||| ||||||||| ||||| ||||| Sbjct 3671 ACAGCCGCCCCGGAGGCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 3730 Query 41692 GGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGC 41751 ||| || ||||| | || ||||||||||| ||||| || || || | ||| ||||| | Sbjct 3731 GGAAAGAGTGCGGCCATCTTCGAGCTGCTTCCCGGCAAAGATGAGCCTCTGCTGGTCTGG 3790 Query 41752 GGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTC 41811 ||| | || |||||||| |||||| ||||| | | |||||||| | ||| Sbjct 3791 GGGGATGCCTTCCTTGTCTTGGATTTTCGCCTTCACGTTCTCAATGGTGTCGCTGGGCTC 3850 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || | || || || || || || || ||||| || ||||||||||| Sbjct 3851 GACTTCGAGAGTGATGGTCTTGCCGGTGAGGGTCTTCACAAAAATCTGCAT 3901 Score = 109 bits (120), Expect = 5e-19 Identities = 157/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 || || | ||| ||||| || ||| ||| ||||| ||||| || || ||||| ||||| Sbjct 5280 AGCCGCAGCACAAGATGGAGAGTGGACTCTTTCTGGATGTTGTAATCTGAGAGAGTGCGG 5339 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||| ||||||||||| |||| | ||| ||||| | ||| | || || Sbjct 5340 CCATCTTCAAGCTGTTTGCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGGATGCCTTCT 5399 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGT 41823 |||| | || | || || | ||| | | ||||||||| | || ||||||| || Sbjct 5400 TTGT-CTTGGATCTTGGCCTTGACGTTTTCAATAGTGTCGCTTGGTTCAACCTCCAGGGT 5458 Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || |||| || || |||||||||||||| Sbjct 5459 GATGGTCTTGCCAGTCAAGGTTTTCACGAAAATCTGCAT 5497 Score = 109 bits (120), Expect = 5e-19 Identities = 156/220 (71%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 41647 ACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTC 41706 ||| | ||| || || || ||| ||| ||||| ||||| |||||||| || ||||| | Sbjct 5510 ACGCAGCACAAGGTGAAGAGTGGACTCTTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCC 5569 Query 41707 GTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTT 41766 || || ||||| ||||||||||| |||| | ||| ||||| | ||| | || ||| || Sbjct 5570 ATCTTCAAGCTGTTTGCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCTTT 5629 Query 41767 GTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTAT 41826 ||| ||| || ||| | | | ||||| || | ||||||||| | || || Sbjct 5630 GTCTTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTTGGCTCCACCTCTAGAGTGAT 5689 Query 41827 CGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTTA 41866 || || || |||| ||||| || || |||||||| ||| Sbjct 5690 GGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCATTTTA 5729 Score = 105 bits (116), Expect = 6e-18 Identities = 164/232 (71%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || ||||| || ||| || ||||| || || ||||||||| Sbjct 3903 CCTCCCCGGAGACGAAGTACAAGATGGAGAGTGGATTCTTTCTGGATATTGTAGTCGGAG 3962 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| | || || |||||||| |||||||| |||| | ||| ||||| | ||| Sbjct 3963 AGAGTGCGGCCATCTTCAAGCTGCTTCCCGGCGAAAATCAATCTCTGCTGGTCTGGAGGA 4022 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACG-ACACA---GTGTCGCTCGACTC 41811 | || || ||||| |||||| ||| |||| | || ||||| |||| ||| Sbjct 4023 ATGCCTTCTTTGTCTTGGATTTTGGCCTT----GACGTTCTCAATGGTGTCACTCGGCTC 4078 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || || | || || ||||| || |||| || || || || ||||||||| Sbjct 4079 GACTTCGAGAGTGATGGTTTTTCCAGTCAAGGTTTTGACAAAGATCTGCATG 4130 Score = 84.2 bits (92), Expect = 2e-11 Identities = 138/197 (70%), Gaps = 8/197 (4%) Strand=Plus/Plus Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730 ||| ||||| || || ||||| || ||||| || | || || |||||||| |||||||| Sbjct 4622 CTCTTTCTGGATATTGTAGTCTGAAAGGGTACGGCCATCTTCAAGCTGCTTCCCGGCGAA 4681 Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGA 41790 || || | || || || | || | || || ||||| |||||| ||| || Sbjct 4682 AATGAGCCTTTGCTGATCTGGAGGGATGCCTTCTTTGTCTTGGATTTTCGCCTT----GA 4737 Query 41791 CGA-CACA---GTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCT 41846 || | || ||||| || | ||| || || | || || ||||| || |||| |||| Sbjct 4738 CGTTCTCAATGGTGTCACTGGGCTCAACTTCGAGAGTGATGGTTTTTCCAGTCAAGGTCT 4797 Query 41847 TTACGAAAATCTGCATG 41863 | ||||||||||||||| Sbjct 4798 TCACGAAAATCTGCATG 4814 >seq8 Length=3271537 Score = 111 bits (122), Expect = 1e-19 Identities = 159/224 (71%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 || || || ||||| |||| ||| ||||||||| || || ||||| || || ||||| Sbjct 1336498 AGTCGCAAAACCAGGTGCAAGGTGGACTCCTTCTGGATATTGTAGTCAGAAAGAGTGCGG 1336439 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || |||||||| ||||| || || || | ||| ||||| | || | || || Sbjct 1336438 CCATCTTCCAGCTGCTTCCCGGCAAAGATGAGCCTCTGCTGGTCAGGCGGGATGCCTTCT 1336379 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 || ||| ||| || ||||| | | |||||||| | ||||||||||| || Sbjct 1336378 TTCTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTG 1336319 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTTATC 41868 || || || || ||||| ||||| || |||| |||||| || || Sbjct 1336318 ATGGTCTTTCCTGTCAGGGTCTTCACAAAAACCTGCATTTTCTC 1336275 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462266686288400