Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apalone_20spinifera_20[genbank_20GCA_5F000385615.1_202013-05-03] 286,620 sequences; 1,931,078,847 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq283893 105 5e-18 seq285165 100 2e-16 >seq283893 Length=4807905 Score = 105 bits (116), Expect = 5e-18 Identities = 112/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 102033 CTTTATATTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTT 102092 |||| ||||| || || || || |||||||| || |||||||| ||||| | ||| |||| Sbjct 4761408 CTTTGTATTCAGCCCCAAAGTGTCTCCACTGGAAACCATACACTGGTCCCAAATCCCCTT 4761467 Query 102093 CATCTCTGTCATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAA 102152 | ||||| | || ||||| ||||||| || || | |||||||| |||||||||| Sbjct 4761468 CCTCTCTCTTATTGAAACCTTGTTTATCCAAGAAGTCACGTGATCCATTGGCATCCCAAA 4761527 Query 102153 TGTGCACGCCAGCTGCTGATAGCTCTTT 102180 | | ||| || ||| || |||||||| Sbjct 4761528 TCTTCACTCCTTTTGCAGAGAGCTCTTT 4761555 >seq285165 Length=8217138 Score = 100 bits (110), Expect = 2e-16 Identities = 88/110 (80%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349 ||| || || | || || || | ||||||||| |||||||||| || ||||||||||| Sbjct 4017442 CTTGAGCTCTCTACTAAGCACTATATTAATTCTATCTTTTAAAGGGCGATTCTTCTCAGG 4017501 Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCTG 4399 ||| |||||||||||| | ||||||| |||| | |||||||||| ||| Sbjct 4017502 AATAGAGAACCAAGTCCTCCTACCCATTATCAACACATTCTGTTTACCTG 4017551 Score = 89.7 bits (98), Expect = 4e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 4056 AAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCAT 4115 ||||||||||||||||| ||||| |||||||||||| || |||| |||||| || |||| Sbjct 7675576 AAGTTTGTATTTCTCTAAATCAATTTCTGGAAAAAATGTATCACTTTCAAACTCATGCAA 7675635 Query 4116 GATCCTAGTCACAAACA 4132 || || |||||||||| Sbjct 7675636 AATTCTTGTCACAAACA 7675652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359989284081620