Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apalone_20spinifera_20[genbank_20GCA_5F000385615.1_202013-05-03] 286,620 sequences; 1,931,078,847 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq207829 111 2e-19 seq283574 105 8e-18 seq162555 98.7 1e-15 seq275374 96.9 4e-15 seq189952 91.5 2e-13 seq284051 82.4 9e-11 >seq207829 Length=4015 Score = 111 bits (122), Expect = 2e-19 Identities = 127/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 52875 TCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 52934 |||| || || |||||||| || || |||||| ||| | || ||||| |||||||| | Sbjct 1333 TCCACCCATAGAAATGCATGCTGGTGAGTTTGCCATAGTTGGGCTCTGCAATATGGATGT 1274 Query 52935 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 52994 ||| || || || ||||||||||| || || ||||| || |||||||| | || |||| Sbjct 1273 TCAGGGACTGGCTCTGATCGATGAAAGCGCCTCTGTCAGCTGCCATTTTGAGAATGGTCT 1214 Query 52995 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 53045 | || | |||||||| | || ||||| | |||| | || ||||||| Sbjct 1213 TCTGGGAGATTTCCCAGACTGTCTTATAGAGCTGCTTCAAGTCATCTGGAA 1163 >seq283574 Length=3212210 Score = 105 bits (116), Expect = 8e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| ||||| ||||| | || ||||| || || ||||| ||||| || || | ||| | Sbjct 1560530 CCTCATCTCTGCTAATGAGCTCATTGGAGAATGTCAGTCCAGGCATAAGACCCCTCTTCT 1560471 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | ||||||||||| | ||||| || || || ||||| |||||||| ||||| ||||||| Sbjct 1560470 TCAGCCAAAATATAGCAGCAAAAGAACCCGAGAAGAAGATTCCTTCCACTGCAGCAAAGG 1560411 Query 24277 CAATAAGTCTTTCTCC 24292 ||| | ||| || || Sbjct 1560410 CAACCACTCTCTCCCC 1560395 Score = 86.0 bits (94), Expect = 7e-12 Identities = 79/100 (79%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 24632 CACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATG 24691 ||| ||||| || ||||| ||||| || | ||||||||||||||| ||||| || || | Sbjct 1391957 CACCTCTTCTACAGTCCAGAATGAAGCTTGTGCCTTTTTATACATTTTCCACATATCCGG 1391898 Query 24692 ATATTGAATTGGAAAAATAACAAATCTATTTGGATTTTTT 24731 ||||| | ||| || || ||||||| || ||||||||| Sbjct 1391897 GTATTGCAGTGGGAAGATGACAAATCGATGAGGATTTTTT 1391858 >seq162555 Length=1600 Score = 98.7 bits (108), Expect = 1e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 54025 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 54084 || ||| |||||||| ||||||||||||||||| || || | || || || |||| || Sbjct 667 CTCCACCCGTTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAACAGGTCCCTGGCTCG 608 Query 54085 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 54144 || ||||| || || || ||||| || || || || ||| | | ||||| ||||||| Sbjct 607 CTGCTCCTCCTTCCCAGTGTTCTTCTTCAGGTCAAGAAACTCAAAGATATCCAAATGCCA 548 Query 54145 CGGTTCCAAGTATATGG 54161 ||| |||| ||| |||| Sbjct 547 CGGCTCCAGGTAGATGG 531 >seq275374 Length=4436 Score = 96.9 bits (106), Expect = 4e-15 Identities = 121/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 54768 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 54827 |||| || | ||| || ||||||||||| | || || || || || || |||||||| | Sbjct 1465 CACTGAACACTTTCTTGGTTTCTTTGTGCAAGTTGGAGACCGCAATCCTTGCGGCTAGGA 1524 Query 54828 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCA 54887 ||||||| || || |||| ||||| || || ||| | || || | ||| || |||| Sbjct 1525 TGGCATAGTCGGGGTGTTTGGTAGTGAGGGTTGCAGCTGTCTCAGCAGCCAGTGTATCCA 1584 Query 54888 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 54933 | || || || || || ||| | |||| || ||||| |||||||| Sbjct 1585 ACTCCACTGTGGTGACACCACTGTATAGACCCTGGATTACCTTCAT 1630 >seq189952 Length=2645 Score = 91.5 bits (100), Expect = 2e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 53384 CCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCA 53443 ||| | || || || ||||| || | || | || ||||| || || | || || ||| Sbjct 1589 CCTTCGTAAGTTTCATATGGCCCATACTCTTTCGCAAGTTCGCAGCTGGATTCCAAAGCA 1648 Query 53444 CCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAAT 53503 |||||||||||||| || || |||| || || || ||| || || |||| ||||| Sbjct 1649 CCGTAATAAATGGTCTCAAAAATCTGCTGGTTCAGCAATTGGGCCTCGGGGCTTTCAAAG 1708 Query 53504 GGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTA 53563 ||||| | | || || ||||| ||||| | ||||| || ||||| || || || | | Sbjct 1709 GGATATCTCATCAGGATGAACGCATCTGCCAGACCTTGCACCCCAATGCCAATGGGGCGA 1768 Query 53564 TGTCTCTTATTAGAGATTTCAGC 53586 || | || || ||||| || || Sbjct 1769 TGGCGTTTGTTGGAGATCTCGGC 1791 >seq284051 Length=2145588 Score = 82.4 bits (90), Expect = 9e-11 Identities = 90/120 (75%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 24395 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 24454 |||||||| || || || || | ||||| |||||||| ||||| || ||||| || || Sbjct 1500444 ATCTTTAATGTAAGTGTCTATGAGCAGACTGTACATTTCTGAATGTATATTTTCCATAGC 1500503 Query 24455 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTC 24514 || || || || |||||| | | ||| || || |||||||||||| | |||||||| Sbjct 1500504 AATCTGGAAGCCATAGAAAAAGCGAGCTTCAGTTATCTGTACTTCTTGGCTGAATCGTTC 1500563 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 591594443937600