Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apalone_20spinifera_20[genbank_20GCA_5F000385615.1_202013-05-03] 286,620 sequences; 1,931,078,847 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq285789 131 2e-25 seq285810 120 4e-22 >seq285789 Length=1422903 Score = 131 bits (144), Expect = 2e-25 Identities = 171/237 (72%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 83143 GAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCACACTGGAGACCAGGCAATGAGCTG 83202 |||||||||||||||||||| | ||| || |||||||| ||||||||| ||| ||| Sbjct 224814 GAACTTCTCGAAGTTCCAGGAGATGTCATTCCGGCACACGGGAGACCAGATGATGTACTG 224873 Query 83203 GGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTAGGCGCCGGCAGGGCCTCTCGTAGGAA 83262 || | | ||| |||| | ||| || || |||||||||||| |||| Sbjct 224874 TGGATTGGTCATCAGCGCCATGGGGTCATCATGTGGGAAAGGCAGGGCCTCTTTCAGGAG 224933 Query 83263 GGCGAAGAGCGGATGTGCCCTTGCACCGTTGACCTCGCACTTCTCGAAGAGCATAAAGTT 83322 | ||||||||| || || |||| ||||| || || |||||||| || | | ||||| Sbjct 224934 AGTGAAGAGCGGGTGAGCATTTGCCCCGTTCACATCACACTTCTCAAACACGGTGAAGTT 224993 Query 83323 CGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAGGGAAGGCAAGATCTCGGCATT 83379 || || | || || |||||||||| |||||| | |||| ||| |||||| |||| Sbjct 224994 GGGTTCATACCCTTTGCCAGGACGGATGTGCTTTAAGGAAAGCAGGATCTCCTCATT 225050 >seq285810 Length=729353 Score = 120 bits (132), Expect = 4e-22 Identities = 119/152 (78%), Gaps = 3/152 (2%) Strand=Plus/Minus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450 |||||| || |||||||| |||||||| || ||||| ||||||| || | ||| Sbjct 33912 CCTGGTAGCCAAACTGGTTGCACGGGAAGCCCAGCACGACCAGCCGGCGGGGG--TAGCG 33855 Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510 | | |||||||| ||| | ||| ||||| ||||| || || | |||||||||||||| | Sbjct 33854 GGC-CTGCAGCTGGTTAAGCTGGGTGTAGTCCCGCACTGTCGTGCCTCAGAGGGACGCCA 33796 Query 83511 CGTTCTCGATGAGCAAGACCCGGCCCCGTAAG 83542 |||||||||| |||| ||||||||||| ||| Sbjct 33795 CGTTCTCGATCAGCACCACCCGGCCCCGGAAG 33764 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 606615633264800