Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apalone_20spinifera_20[genbank_20GCA_5F000385615.1_202013-05-03] 286,620 sequences; 1,931,078,847 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq284675 113 5e-20 seq285083 89.7 5e-13 seq283574 84.2 2e-11 >seq284675 Length=1105255 Score = 113 bits (124), Expect = 5e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 |||||||| || || |||||||| | || ||||| |||||||| | || || || || Sbjct 341649 AAAATGCAGATCTTTGTAAAAACCTTGACTGGCAAGACCATCACGCTAGAAGTAGAGCCC 341590 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| | | | | |||||| ||||| | |||||||| ||||| || | || Sbjct 341589 AGTGACACCATTGAGAATGTCAAGGCCAAAATCCAGGACAAAGAAGGCATTCCTCCAGAT 341530 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| | | |||| || || || ||||| || || | ||||||||| |||||| Sbjct 341529 CAGCAGAGGTTGATCTTTGCTGGGAAGCAGCTAGAAGATGGGCGCACCCTGTCAGACTAC 341470 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||| || |||| ||||| | || ||||| | |||| || Sbjct 341469 AACATCCAGAAAGAATCCACTCTGCACTTGGTCCTGCGCCTCCGGGGTGG 341420 >seq285083 Length=8456797 Score = 89.7 bits (98), Expect = 5e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 40804 GACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGAC 40863 |||||||| | || |||| || ||||| |||||||| || | |||||||| ||| Sbjct 3013771 GACCAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGAC 3013712 Query 40864 TACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||||||| |||| || ||||| ||| |||| |||| || ||| Sbjct 3013711 TACAACATCCAGAAGGAATCCACCCTCCATCTTGTGCTGCGTCTGAGAGGTGGC 3013658 >seq283574 Length=3212210 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101 |||| ||||| || || || || || ||||||| ||||| ||| || || ||||||| Sbjct 1560405 TGGTTGCCTTTGCTGCAGTGGAAGGAATCTTCTTCTCGGGTTCTTTTGCTGCTATATTTT 1560464 Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161 |||| ||||| | || || ||||| || ||||| ||| ||| |||||||| ||| | Sbjct 1560465 GGCTGAAGAAGAGGGGTCTTATGCCTGGACTGACATTCTCCAATGAGCTCATTAGCAGAG 1560524 Query 117162 ACGAGG 117167 | |||| Sbjct 1560525 ATGAGG 1560530 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 513373298411200