Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apalone_20spinifera_20[genbank_20GCA_5F000385615.1_202013-05-03] 286,620 sequences; 1,931,078,847 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq283893 111 1e-19 >seq283893 Length=4807905 Score = 111 bits (122), Expect = 1e-19 Identities = 127/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 97117 GTGACATGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCT 97176 ||||||||||| |||||| | || | || ||||| || || || || |||||||||||| Sbjct 4300414 GTGACATGGGCAATCATATATGTGAGCAGTGAATAACTGGCGATATTGAAAGGCACCCCT 4300473 Query 97177 AGTCCCATATCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCATCACACACATAA 97236 |||||||| || | ||||| ||||| ||||| || || || | |||| |||||| Sbjct 4300474 AGTCCCATGTCTCCAGATCTCTGATACAACTGGCAAGACAGTTCACCATTTAGAACATAA 4300533 Query 97237 AACTGACTCAATACATGACAGGGGGGCAACGCCATTTTTGGAACATCTAAG 97287 ||||| | | | || || || ||||| |||||| || || ||||||| Sbjct 4300534 AACTGGCAAAGGGCGTGGCATGGAGGCAAAGCCATTAGTGAAATATCTAAG 4300584 Score = 87.8 bits (96), Expect = 1e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 97402 TATTCTGCTCCAAAATGCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCT 97461 ||||| || ||||| || ||||| ||||| ||||| || ||||| | || ||||| ||| Sbjct 4761413 TATTCAGCCCCAAAGTGTCTCCACTGGAAACCATACACTGGTCCCAAATCCCCTTCCTCT 4761472 Query 97462 CTATCACAGAAACCAAGCTTATCTAAATAGGACCTAGATCCATTTGCATCCCAAATGTGC 97521 || | | |||||| | ||||| || || | |||||||| ||||||||||| | | Sbjct 4761473 CTCTTATTGAAACCTTGTTTATCCAAGAAGTCACGTGATCCATTGGCATCCCAAATCTTC 4761532 Query 97522 ACACCAGATGCTGCAAGCTCTTT 97544 || || ||| | |||||||| Sbjct 4761533 ACTCCTTTTGCAGAGAGCTCTTT 4761555 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 345572620633400