Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apalone_20spinifera_20[genbank_20GCA_5F000385615.1_202013-05-03] 286,620 sequences; 1,931,078,847 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq284675 84.2 1e-11 >seq284675 Length=1105255 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || || | ||| |||| ||| | ||| ||||||||| ||||||||||| ||| Sbjct 341420 CCACCCCGGAGGCGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCTGAC 341479 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || | || || | |||||| || || || || | || |||||| || || Sbjct 341480 AGGGTGCGCCCATCTTCTAGCTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGAGGA 341539 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTG--CTTTAGATCGGCTATCGAATCGGTCGATTCGA 34340 | || || ||||| || ||||| ||| | || | || | || | | || | Sbjct 341540 ATGCCTTCTTTGTC--CTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCTA 341597 Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 | || | ||||||||| ||||| || | ||||| |||||||||||||| Sbjct 341598 CTTCTAGCGTGATGGTCTTGCCAGTCAAGGTTTTTACAAAGATCTGCAT 341646 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 321943450947200