Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apalone_20spinifera_20[genbank_20GCA_5F000385615.1_202013-05-03] 286,620 sequences; 1,931,078,847 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq283574 98.7 9e-16 seq284051 91.5 1e-13 >seq283574 Length=3212210 Score = 98.7 bits (108), Expect = 9e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318 || || || || || | ||| || || ||||| || || ||||| || || | || || Sbjct 1560528 TCATCTCTGCTAATGAGCTCATTGGAGAATGTCAGTCCAGGCATAAGACCCCTCTTCTTC 1560469 Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378 | |||||||||||| ||||| ||||| || ||||| || ||||| ||||| ||||| ||| Sbjct 1560468 AGCCAAAATATAGCAGCAAAAGAACCCGAGAAGAAGATTCCTTCCACTGCAGCAAAGGCA 1560409 Query 16379 ACCAATCGCTCACC 16392 |||| || ||| || Sbjct 1560408 ACCACTCTCTCCCC 1560395 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 15886 TTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTTT 15945 ||| ||||| ||| |||| || ||||| || || | | || |||||||| | Sbjct 2997043 TTAGAAATCTGCATCCAGAGTGAAAACATTGTCCGTTGTTTCTGCCATAACTGCAAAGCG 2996984 Query 15946 TTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTC 16005 ||||| || ||| | ||| |||||||| |||||||||||||| | |||||||| || Sbjct 2996983 CTGATACTCTGAAACCCGCTTCTCAAAGAAGTTTGTTTTTCCTTCCAGGGAAATATTCTC 2996924 Query 16006 CATAAAATCAAAAGGATTTTTTG 16028 ||| ||||||||||| |||| || Sbjct 2996923 CATGAAATCAAAAGGGTTTTCTG 2996901 >seq284051 Length=2145588 Score = 91.5 bits (100), Expect = 1e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 16498 ATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGC 16557 |||| ||| ||||| ||||| || | ||| |||||||||||||| ||||| ||||| || Sbjct 1500444 ATCTTTAATGTAAGTGTCTATGAGCAGACTGTACATTTCTGAATGTATATTTTCCATAGC 1500503 Query 16558 TATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTC 16602 ||||| || ||||| || | | |||||| | ||| |||||||| Sbjct 1500504 AATCTGGAAGCCATAGAAAAAGCGAGCTTCAGTTATCTGTACTTC 1500548 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 460854935132000