Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apalone_20spinifera_20[genbank_20GCA_5F000385615.1_202013-05-03] 286,620 sequences; 1,931,078,847 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq286078 140 2e-28 seq284884 111 1e-19 >seq286078 Length=3490189 Score = 140 bits (154), Expect = 2e-28 Identities = 167/224 (75%), Gaps = 2/224 (1%) Strand=Plus/Minus Query 107626 ATTACCTCAACATAAC-CAGAGACTGTGAGCGCTTCAAGGCCCAAAGGAAGTTCATACAG 107684 ||||||| ||||| || ||| ||||| | || |||||| ||| ||| ||| || || Sbjct 2759708 ATTACCTGAACATGACTCAG-GACTGCGCGCTCTTCAAAGCCGGGCGGAGGTTTATTGAG 2759650 Query 107685 TTCCCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAG 107744 | ||| ||||| || || ||| || ||||| || |||||||| |||||||| || ||| Sbjct 2759649 TCCCCCCTGAGCAAGGAGGAGGAGGATTTCCCGATCGCCTACTCCATGGTGGTGCACGAG 2759590 Query 107745 AAGATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGT 107804 ||||| || | || || |||||||||| || | || || || |||||||| ||||| Sbjct 2759589 AAGATCGAGATGTTCGAGAGGCTGCTGCGGTCCATCTACGCGCCCCAGAACATCTACTGC 2759530 Query 107805 GTCCACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGT 107848 ||||||||||| | |||||||| | ||||| ||||| || Sbjct 2759529 GTCCACGTGGACCTCAAGTCCCCGGCCGAGTTCAAGGAGGCCGT 2759486 >seq284884 Length=8161990 Score = 111 bits (122), Expect = 1e-19 Identities = 565/882 (64%), Gaps = 23/882 (3%) Strand=Plus/Minus Query 107688 CCACTGAGTAAAGAAG-AGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAA 107746 || || |||||||||| |||| || || || |||||||| || || || | || | || Sbjct 7517358 CCTCTCAGTAAAGAAGAAGCT-GAATTTCCAATTGCCTATTCAATAGTCATATATCACAA 7517300 Query 107747 GATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGT 107806 || || | |||| | || || || | | ||||| |||||||| ||||| | Sbjct 7517299 AATAGACATGCTTGATAGACTTCTAAGATCAATCTATGCACCTCAGAATTATTACTGCAT 7517240 Query 107807 CCACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTG 107866 || || || ||||| ||||| |||| | || || |||| ||| | ||||| Sbjct 7517239 TCATGTTGACAAAAAGTCTCCAGAATCTTTTCTGGCTGCAGTTAAGGGAATTGTGTCCTG 7517180 Query 107867 CTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAG 107926 ||| |||||||| || ||||| | |||| || || ||||| || ||| ||| Sbjct 7517179 TTTCAATAATGTCTTTATTGCCAGCCAATTGGAAAGTGTAGTGTATGCTTCATGGAGCAG 7517120 Query 107927 AGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCA--TGGAAG 107984 || || |||||||| ||||| ||| |||| | || |||| ||| | | ||||| Sbjct 7517119 GGTACAGGCTGACCTCAACTGCATGAAAGA-TCTCTACAGA-AGAAGTACAAACTGGAAA 7517062 Query 107985 TACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTG 108044 || || | ||| ||| || | ||||| || || |||||||| || || || | Sbjct 7517061 TATTTGATAAATTTATGTGGTATGGACTTTCCTATTAAGACCAACCAGGAAATAGTGGAG 7517002 Query 108045 GCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAG---GTACCTTCTGAGTCC 108101 | || || |||||| | ||||| | || ||||| | ||||| || | Sbjct 7517001 AAATTGAAAGCCTTAAAGGGTGAAAACAGCTTAGAAACTGAGAAAATGCCTTC-CAG--C 7516945 Query 108102 aaaaaaaaTCGCTGGAAATACCGCTATGA----GGTGACAGACACACTGTACCCTACCAG 108157 ||| ||| || |||||| | | |||||| | ||| | | | | | | | Sbjct 7516944 AAAGAAATACGATGGAAAAAACACTATGAAATCGTTGA-TGGTAAATTAAAGAACATGGG 7516886 Query 108158 CA-AGATGAAGGACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATTTTG 108216 | ||| || | ||||| ||| | | || | ||| | || | ||||||||||| Sbjct 7516885 AATAGA-CAAACAACCTCCACCTCTCAGTACTCCTGTTTTCTCTGGCAGTGCCTATTTTG 7516827 Query 108217 TGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAAC-CCTAAATCCCAAAGACTGGTT 108275 | || | | ||||| | |||| |||| ||| | |||||| || | || Sbjct 7516826 TTGCTAGTAGGAGATTTGTAGAGTATGTGCTAGAAAACAGCAAAATCCTTGAG-TTTATT 7516768 Query 108276 GAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCT 108335 ||||||| ||||| || ||||||||||| ||| || | ||||| || |||| | | Sbjct 7516767 GAATGGGCTAAAGATACATATAGCCCCGATGAATACTTGTGGGCTACTATTCAAAG-AAT 7516709 Query 108336 CCGTGGA-TGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGACTGC 108394 || || | | || || | ||| || | ||||||| | || || ||||||| ||| Sbjct 7516708 CCCTGAAGTTCCAGGGGCAGTTTCTTCCAGTGACAAGTATGATATTTCTGACATGAATGC 7516649 Query 108395 CATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTTA 108454 | || ||| | || |||||||| || ||||| ||||| | || || || || Sbjct 7516648 TCTTGCAAGGTTTGTGAAGTGGCATTATTTTGAGGGGGATGTGTCAAAAGGTGCCCCCTA 7516589 Query 108455 TGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTA 108514 | | || ||| |||||| ||| | | | | || | | || | || ||| || | Sbjct 7516588 TCCTCCATGCAATGGAATTCATGTGCGTTCTGTGTGTGTATTTGGAGTGGGAGACTTGAA 7516529 Query 108515 CTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGA 108556 |||||| | ||||| || ||| | || || ||||| ||||| Sbjct 7516528 CTGGATGTTACAGAAACACCACTTATTTGCTAACAAATTTGA 7516487 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347052233957880