Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apalone_20spinifera_20[genbank_20GCA_5F000385615.1_202013-05-03] 286,620 sequences; 1,931,078,847 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq284675 91.5 1e-13 >seq284675 Length=1105255 Score = 91.5 bits (100), Expect = 1e-13 Identities = 164/239 (69%), Gaps = 2/239 (1%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||||||||| ||| || ||||| ||||||||||| ||| ||| | || || Sbjct 341438 ACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCTGACAGGGTGCGCCCATCTTCT 341497 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || || || ||||||| ||| || || ||||| | || || |||||| Sbjct 341498 AGCTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGAGGAATGCCTTCTTTGTCCTGG 341557 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 ||||| ||| || | | | | |||| | ||| || || | || || |||||| Sbjct 341558 ATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACTTCTAGCGTGATGGTCTTG 341617 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTTGCCTCAATACACACAGATGTCGATTTT 45366 || |||| || || |||||||| ||||| || || ||| | ||| ||| ||||| Sbjct 341618 CCAGTCAAGGTTTTTACAAAGATCTGCATTTT--CTTTATAAAAACAAATGAACATTTT 341674 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 393695130719020