Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apalone_20spinifera_20[genbank_20GCA_5F000385615.1_202013-05-03] 286,620 sequences; 1,931,078,847 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq209978 114 1e-20 seq162555 107 2e-18 seq189952 91.5 1e-13 >seq209978 Length=1003 Score = 114 bits (126), Expect = 1e-20 Identities = 116/151 (77%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 23046 CCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCG 23105 |||||||||||||| |||||||| || ||||| || || || ||||| ||||| || | Sbjct 438 CCACCTCGTCTTTGCTGGTGTACTCCACTATTTCTGTGCACAGGTTGCTGCACTTGATGG 497 Query 23106 TGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCG 23165 | |||| || ||||||||| || | ||| || || |||||||| | |||||| || | Sbjct 498 TTCCCAGGTTCTGCTGGTTGCTCTTCCTATTACAAGAGTCCTTGTACAACATGTAAGGGG 557 Query 23166 TGCCCGTCTCGACCTGCGACTCGATGATCGC 23196 | || |||||| ||| ||||| ||||| || Sbjct 558 TTCCTGTCTCGGTCTGAGACTCTATGATGGC 588 >seq162555 Length=1600 Score = 107 bits (118), Expect = 2e-18 Identities = 116/154 (75%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 23342 TCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGC 23401 || || ||| |||| || ||||| || ||||| || || ||||||| || | ||| ||| Sbjct 666 TCCACCCGTTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAACAGGTCCCTGGCTCGC 607 Query 23402 ACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCAC 23461 |||||| || || |||||||| |||| || | ||| || || | ||| ||||||| Sbjct 606 TGCTCCTCCTTCCCAGTGTTCTTCTTCAGGTCAAGAAACTCAAAGATATCCAAATGCCAC 547 Query 23462 GGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCT 23495 ||||| ||||| | |||||| || || ||||||| Sbjct 546 GGCTCCAGGTAGATGGCAAAGGCCCCAGGTCTCT 513 >seq189952 Length=2645 Score = 91.5 bits (100), Expect = 1e-13 Identities = 138/190 (73%), Gaps = 10/190 (5%) Strand=Plus/Plus Query 22691 GGGCTGCCTTCGTACGTTTCGTACGGACCATA-TATCGCGGCAAGTTCGCAGCTCGCCTC 22749 |||| ||||||||| ||||| || || ||||| | | || ||||||||||||| | || Sbjct 1583 GGGCAGCCTTCGTAAGTTTCATATGGCCCATACTCTTTCG-CAAGTTCGCAGCTGGATTC 1641 Query 22750 CAACGCGCCGTAATATATAGTCTCGAAGATTTTCTTGTT---CAATTCGGCGGCGGCGAC 22806 ||| || |||||||| || ||||| || || | || ||| ||||| ||| ||| Sbjct 1642 CAAAGCACCGTAATAAATGGTCTCAAAAATCTGCTGGTTCAGCAATTGGGCCTCGG---G 1698 Query 22807 GCTTTCGTACGGCATA-CGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATAC 22865 |||||| | || ||| | ||||| | |||||| || |||| ||| || || || || | Sbjct 1699 GCTTTC-AAAGGGATATCTCATCAGGATGAACGCATCTGCCAGACCTTGCACCCCAATGC 1757 Query 22866 CGATCGGTCG 22875 | || || || Sbjct 1758 CAATGGGGCG 1767 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444169330430400