Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apalone_20spinifera_20[genbank_20GCA_5F000385615.1_202013-05-03] 286,620 sequences; 1,931,078,847 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq284051 114 2e-20 seq283574 114 2e-20 seq207829 111 2e-19 seq189952 96.9 4e-15 seq162555 96.9 4e-15 >seq284051 Length=2145588 Score = 114 bits (126), Expect = 2e-20 Identities = 98/121 (81%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| |||||||| || | ||| |||||||| |||||||| ||||||| || | ||| | Sbjct 1497777 CCTCATCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAACCCTCTCTTCT 1497836 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | |||||||| || || || || || ||||| |||||||||||||| ||||| ||||| | Sbjct 1497837 TCAGCCAAAAGATAGATGCAAAGGAGCCGGAGAAGAAGATTCCTTCCACTGCTGCAAAAG 1497896 Query 33724 C 33724 | Sbjct 1497897 C 1497897 >seq283574 Length=3212210 Score = 114 bits (126), Expect = 2e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| ||||| ||||| | || || || || || ||||| ||||| || || | ||| | Sbjct 1560530 CCTCATCTCTGCTAATGAGCTCATTGGAGAATGTCAGTCCAGGCATAAGACCCCTCTTCT 1560471 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||||||||| | ||| || || || || |||||||||||||| ||||||||||||| Sbjct 1560470 TCAGCCAAAATATAGCAGCAAAAGAACCCGAGAAGAAGATTCCTTCCACTGCAGCAAAGG 1560411 Query 33724 CAATAAGTCTCTCTCC 33739 ||| | |||||| || Sbjct 1560410 CAACCACTCTCTCCCC 1560395 Score = 86.0 bits (94), Expect = 8e-12 Identities = 77/97 (79%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 34079 CACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATG 34138 ||| ||||| || ||||| ||||| || | ||||||||||||||| ||||| || || | Sbjct 1391957 CACCTCTTCTACAGTCCAGAATGAAGCTTGTGCCTTTTTATACATTTTCCACATATCCGG 1391898 Query 34139 ATATTGGATTGGGAAAATAACAAATCTATTTGGATTT 34175 ||||| | |||||| || ||||||| || |||||| Sbjct 1391897 GTATTGCAGTGGGAAGATGACAAATCGATGAGGATTT 1391861 Score = 84.2 bits (92), Expect = 3e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 33966 AAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 34025 ||||||||||| || ||||||||||||||||||||||| |||| ||||| || || Sbjct 1552657 AAATTTTCATTTACAATTCCATCACTGGCTGCAAAAAAAGCCAGAACATGAGAGATGAAG 1552598 Query 34026 TATTTTTCGTCTGGTGTTAGTTTATTCCA 34054 |||||||| |||| | | || || ||||| Sbjct 1552597 TATTTTTCTTCTGATTTCAGCTTGTTCCA 1552569 >seq207829 Length=4015 Score = 111 bits (122), Expect = 2e-19 Identities = 127/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 62113 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62172 |||| || || |||||||| || || |||||| ||| | || ||||| |||||||| | Sbjct 1333 TCCACCCATAGAAATGCATGCTGGTGAGTTTGCCATAGTTGGGCTCTGCAATATGGATGT 1274 Query 62173 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62232 ||| || || || ||||||||||| || || ||||| || |||||||| | || |||| Sbjct 1273 TCAGGGACTGGCTCTGATCGATGAAAGCGCCTCTGTCAGCTGCCATTTTGAGAATGGTCT 1214 Query 62233 TTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 62283 | || | |||||||| | || ||||| | |||| | || ||||||| Sbjct 1213 TCTGGGAGATTTCCCAGACTGTCTTATAGAGCTGCTTCAAGTCATCTGGAA 1163 >seq189952 Length=2645 Score = 96.9 bits (106), Expect = 4e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 62622 CCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCA 62681 ||| | || || |||||||| || | || | || |||| || || | || || ||| Sbjct 1589 CCTTCGTAAGTTTCATATGGCCCATACTCTTTCGCAAGTTCGCAGCTGGATTCCAAAGCA 1648 Query 62682 CCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAAT 62741 |||||||||||||| ||||| |||| || || || ||| || || ||||| ||||| Sbjct 1649 CCGTAATAAATGGTCTCAAAAATCTGCTGGTTCAGCAATTGGGCCTCGGGGCTTTCAAAG 1708 Query 62742 GGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTA 62801 ||||| | | || || ||||| || || | ||||| || ||||| || || || | | Sbjct 1709 GGATATCTCATCAGGATGAACGCATCTGCCAGACCTTGCACCCCAATGCCAATGGGGCGA 1768 Query 62802 TGTCTCTTATTAGAGATTTCAGC 62824 || | || || ||||| || || Sbjct 1769 TGGCGTTTGTTGGAGATCTCGGC 1791 >seq162555 Length=1600 Score = 96.9 bits (106), Expect = 4e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 63263 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCT 63322 || ||| |||||||| ||||||||||||||||| || || | || || || || | || Sbjct 667 CTCCACCCGTTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAACAGGTCCCTGGCTCG 608 Query 63323 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63382 || ||||| || || || ||||| || || || || ||| | | ||||| ||||||| Sbjct 607 CTGCTCCTCCTTCCCAGTGTTCTTCTTCAGGTCAAGAAACTCAAAGATATCCAAATGCCA 548 Query 63383 CGGTTCCAAGTATATGGC 63400 ||| |||| ||| ||||| Sbjct 547 CGGCTCCAGGTAGATGGC 530 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627561120993600