Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apalone_20spinifera_20[genbank_20GCA_5F000385615.1_202013-05-03] 286,620 sequences; 1,931,078,847 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq284051 120 3e-22 seq283574 102 8e-17 seq189952 82.4 7e-11 >seq284051 Length=2145588 Score = 120 bits (132), Expect = 3e-22 Identities = 107/134 (80%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 || |||||||| || |||||||||||||| || | ||| ||||| || |||| || || Sbjct 1497779 TCATCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAACCCTCTCTTCTTC 1497838 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | |||||| |||| ||||| || || || ||||| ||||| ||||| |||||||| ||| Sbjct 1497839 AGCCAAAAGATAGATGCAAAGGAGCCGGAGAAGAAGATTCCTTCCACTGCTGCAAAAGCT 1497898 Query 11774 ACTACTCTTTCTCC 11787 ||||| | |||||| Sbjct 1497899 ACTACACGTTCTCC 1497912 >seq283574 Length=3212210 Score = 102 bits (112), Expect = 8e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 || ||||| || || || ||||| || ||||| | ||| ||||| | || | || || Sbjct 1560528 TCATCTCTGCTAATGAGCTCATTGGAGAATGTCAGTCCAGGCATAAGACCCCTCTTCTTC 1560469 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | |||||||||||||||||| ||||| || ||||| ||||| ||||| || ||||| || Sbjct 1560468 AGCCAAAATATAGCAGCAAAAGAACCCGAGAAGAAGATTCCTTCCACTGCAGCAAAGGCA 1560409 Query 11774 ACTACTCTTTCTCC 11787 || ||||| || || Sbjct 1560408 ACCACTCTCTCCCC 1560395 >seq189952 Length=2645 Score = 82.4 bits (90), Expect = 7e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197 |||||||| ||||| || | ||||| | || || || || || || || || |||||| Sbjct 300 ACCTGAAACTCTCCCGAAAGGACTCTGCGCGTGTAGATGTTACTGGTGTAGGGCTCAATG 359 Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257 ||||| ||||| | || || |||| ||||| ||||| |||||||| | | || ||| Sbjct 360 GACTCGTTATTCCCCAAGATCTGAGCAGTAGAAGCAGTTGGCATTGGAGAAAGGAGTAGG 419 Query 37258 CTATTTCT 37265 || ||||| Sbjct 420 CTGTTTCT 427 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 466846192772800