Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apalone_20spinifera_20[genbank_20GCA_5F000385615.1_202013-05-03] 286,620 sequences; 1,931,078,847 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq286514 118 1e-21 seq283574 111 2e-19 seq207829 111 2e-19 seq275374 96.9 5e-15 seq162555 96.9 5e-15 seq189952 91.5 2e-13 >seq286514 Length=1988041 Score = 118 bits (130), Expect = 1e-21 Identities = 143/195 (73%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 9227 TTATTTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATATC 9286 |||||| ||||| || |||| | ||| | | || ||| | |||||||||||||||||| Sbjct 410181 TTATTTTTTATTTAATGCTTCTAGAAGGCGCAGCAAATGTAGGAACAGATTGATGATATC 410122 Query 9287 CAAGTAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGA 9346 ||||||| |||||| | || || | ||| |||||||| || || || || || | Sbjct 410121 TAAGTAGAGATTGATGGCAGCCAATATATACTCTTCAGGGGACAGTCGGTGCATCAGCAA 410062 Query 9347 GTGCGTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAG 9406 || ||||||||||| || ||||| ||||| | || || || | ||||| | | ||| Sbjct 410061 ATGAGTGTCATAGATGATAAATCCACAGAACAGCAGCGCTCCCACAGCAGCAAACAACAG 410002 Query 9407 CTCCACTGTTTCACT 9421 ||| | ||| ||||| Sbjct 410001 CTCTATTGTCTCACT 409987 Score = 93.3 bits (102), Expect = 6e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 9480 CCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGAGTATATGCAGTCAGAGCAAGA 9539 || ||||||| ||| |||||||||||||| || || | |||||| |||||| ||||| Sbjct 1591518 CCAGCTCCAAATTTGCTGAAATCTCTCTTGGACTGCAAAGTATACATAGTCAGTCCAAGA 1591459 Query 9540 AACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGACATGCACATCATAGAAAGTAAC 9598 ||||| ||||| ||||| || |||||||| | || || |||||||| || || || Sbjct 1591458 AACACAGCAGTCGTCAGAATAAAAGCTTGTAAGACAACTGATACATCATAAAATGTCAC 1591400 >seq283574 Length=3212210 Score = 111 bits (122), Expect = 2e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| ||||| ||||| | || ||||| || || ||||| ||||| || || | ||| | Sbjct 1560530 CCTCATCTCTGCTAATGAGCTCATTGGAGAATGTCAGTCCAGGCATAAGACCCCTCTTCT 1560471 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | ||||||||||| | ||||| || || || ||||| |||||||| ||||| ||||||| Sbjct 1560470 TCAGCCAAAATATAGCAGCAAAAGAACCCGAGAAGAAGATTCCTTCCACTGCAGCAAAGG 1560411 Query 36300 CAATAAGTCTCTCTCC 36315 ||| | |||||| || Sbjct 1560410 CAACCACTCTCTCCCC 1560395 >seq207829 Length=4015 Score = 111 bits (122), Expect = 2e-19 Identities = 127/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 64906 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 64965 |||| || || |||||||| || || |||||| ||| | || ||||| |||||||| | Sbjct 1333 TCCACCCATAGAAATGCATGCTGGTGAGTTTGCCATAGTTGGGCTCTGCAATATGGATGT 1274 Query 64966 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 65025 ||| || || || ||||||||||| || || ||||| || |||||||| | || |||| Sbjct 1273 TCAGGGACTGGCTCTGATCGATGAAAGCGCCTCTGTCAGCTGCCATTTTGAGAATGGTCT 1214 Query 65026 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 65076 | || | |||||||| | || ||||| | |||| | || ||||||| Sbjct 1213 TCTGGGAGATTTCCCAGACTGTCTTATAGAGCTGCTTCAAGTCATCTGGAA 1163 >seq275374 Length=4436 Score = 96.9 bits (106), Expect = 5e-15 Identities = 121/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 66799 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAA 66858 |||| || | ||| || ||||||||||| | || || || || || || ||||||| | Sbjct 1465 CACTGAACACTTTCTTGGTTTCTTTGTGCAAGTTGGAGACCGCAATCCTTGCGGCTAGGA 1524 Query 66859 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 66918 ||||||| || || |||| ||||| || || ||| | || || ||||| || |||| Sbjct 1525 TGGCATAGTCGGGGTGTTTGGTAGTGAGGGTTGCAGCTGTCTCAGCAGCCAGTGTATCCA 1584 Query 66919 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 66964 | || || || || || ||| | |||| || ||||| |||||||| Sbjct 1585 ACTCCACTGTGGTGACACCACTGTATAGACCCTGGATTACCTTCAT 1630 >seq162555 Length=1600 Score = 96.9 bits (106), Expect = 5e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 66056 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCT 66115 || ||| |||||||| ||||||||||||||||| || || | || | || |||| || Sbjct 667 CTCCACCCGTTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAACAGGTCCCTGGCTCG 608 Query 66116 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCA 66175 || ||||| || || || ||||| || || || || ||| | | ||||| ||||||| Sbjct 607 CTGCTCCTCCTTCCCAGTGTTCTTCTTCAGGTCAAGAAACTCAAAGATATCCAAATGCCA 548 Query 66176 CGGTTCCAAGTATATGGC 66193 ||| |||| ||| ||||| Sbjct 547 CGGCTCCAGGTAGATGGC 530 >seq189952 Length=2645 Score = 91.5 bits (100), Expect = 2e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 65415 CCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCA 65474 ||| | || || || ||||| || | || | || ||||| || || | || || ||| Sbjct 1589 CCTTCGTAAGTTTCATATGGCCCATACTCTTTCGCAAGTTCGCAGCTGGATTCCAAAGCA 1648 Query 65475 CCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAAT 65534 |||||||||||||| || || |||| || || || ||| || || |||| ||||| Sbjct 1649 CCGTAATAAATGGTCTCAAAAATCTGCTGGTTCAGCAATTGGGCCTCGGGGCTTTCAAAG 1708 Query 65535 GGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTA 65594 ||||| | | || || ||||| ||||| | ||||| || ||||| || || || | | Sbjct 1709 GGATATCTCATCAGGATGAACGCATCTGCCAGACCTTGCACCCCAATGCCAATGGGGCGA 1768 Query 65595 TGTCTCTTATTAGAGATTTCAGC 65617 || | || || ||||| || || Sbjct 1769 TGGCGTTTGTTGGAGATCTCGGC 1791 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 655814731400800