Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apalone_20spinifera_20[genbank_20GCA_5F000385615.1_202013-05-03] 286,620 sequences; 1,931,078,847 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq283574 123 4e-23 seq284051 116 5e-21 seq207829 114 2e-20 seq162555 102 1e-16 seq189952 91.5 2e-13 >seq283574 Length=3212210 Score = 123 bits (136), Expect = 4e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| ||||| ||||| || || ||||| || || ||||| ||||| || || | ||| | Sbjct 1560530 CCTCATCTCTGCTAATGAGCTCATTGGAGAATGTCAGTCCAGGCATAAGACCCCTCTTCT 1560471 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||||||||| | ||||| || || || |||||||||||||| ||||| ||||||| Sbjct 1560470 TCAGCCAAAATATAGCAGCAAAAGAACCCGAGAAGAAGATTCCTTCCACTGCAGCAAAGG 1560411 Query 50102 CAACAAGTCTCTCTCC 50117 |||| | |||||| || Sbjct 1560410 CAACCACTCTCTCCCC 1560395 Score = 84.2 bits (92), Expect = 3e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 50458 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 50517 || ||||| || ||||| ||||| || | ||||||||||||||| ||||| || || | Sbjct 1391956 ACCTCTTCTACAGTCCAGAATGAAGCTTGTGCCTTTTTATACATTTTCCACATATCCGGG 1391897 Query 50518 TATTGGATTGGGAAAATAACAAATCTATTTGGATTT 50553 ||||| | |||||| || ||||||| || |||||| Sbjct 1391896 TATTGCAGTGGGAAGATGACAAATCGATGAGGATTT 1391861 >seq284051 Length=2145588 Score = 116 bits (128), Expect = 5e-21 Identities = 100/124 (81%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| |||||||| || ||||| || ||||| |||||||| ||||||| || | ||| | Sbjct 1497777 CCTCATCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAACCCTCTCTTCT 1497836 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | |||||||| || || ||||| || || || |||||||||||||| ||||| ||||| | Sbjct 1497837 TCAGCCAAAAGATAGATGCAAAGGAGCCGGAGAAGAAGATTCCTTCCACTGCTGCAAAAG 1497896 Query 50102 CAAC 50105 | || Sbjct 1497897 CTAC 1497900 >seq207829 Length=4015 Score = 114 bits (126), Expect = 2e-20 Identities = 128/171 (75%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 78785 TCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 78844 |||| || ||||||||||| || || |||||| ||| | || ||||| |||||||| | Sbjct 1333 TCCACCCATAGAAATGCATGCTGGTGAGTTTGCCATAGTTGGGCTCTGCAATATGGATGT 1274 Query 78845 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 78904 ||| || || || ||||||||||| || || ||||| || |||||||| | || |||| Sbjct 1273 TCAGGGACTGGCTCTGATCGATGAAAGCGCCTCTGTCAGCTGCCATTTTGAGAATGGTCT 1214 Query 78905 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 78955 | || | |||||||| | || ||||| | |||| | || ||||||| Sbjct 1213 TCTGGGAGATTTCCCAGACTGTCTTATAGAGCTGCTTCAAGTCATCTGGAA 1163 >seq162555 Length=1600 Score = 102 bits (112), Expect = 1e-16 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 79939 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 79998 || |||||||| ||||||||||||||||| || || | || || || |||| || ||| Sbjct 663 ACCCGTTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAACAGGTCCCTGGCTCGCTGC 604 Query 79999 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 80058 ||||| || || || ||||| || || || || ||| | | ||||| |||||||||| Sbjct 603 TCCTCCTTCCCAGTGTTCTTCTTCAGGTCAAGAAACTCAAAGATATCCAAATGCCACGGC 544 Query 80059 TCCAAGTATATGGC 80072 |||| ||| ||||| Sbjct 543 TCCAGGTAGATGGC 530 >seq189952 Length=2645 Score = 91.5 bits (100), Expect = 2e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 79299 GTATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTA 79358 ||| |||||||| || || | || || || | ||| || || | || || || ||||| Sbjct 1594 GTAAGTTTCATATGGCCCATACTCTTTCGCAAGTTCGCAGCTGGATTCCAAAGCACCGTA 1653 Query 79359 ATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGATA 79418 ||||||||| || ||||||| || || || ||| || || |||| ||||| ||||| Sbjct 1654 ATAAATGGTCTCAAAAATCTGCTGGTTCAGCAATTGGGCCTCGGGGCTTTCAAAGGGATA 1713 Query 79419 ATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCT 79478 | | || || ||||| ||||| | ||||| || ||||| || || || | ||| | Sbjct 1714 TCTCATCAGGATGAACGCATCTGCCAGACCTTGCACCCCAATGCCAATGGGGCGATGGCG 1773 Query 79479 CTTATTAGAAATTTCAGC 79496 || || || || || || Sbjct 1774 TTTGTTGGAGATCTCGGC 1791 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 715695422456800