Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Apalone_20spinifera_20[genbank_20GCA_5F000385615.1_202013-05-03]
286,620 sequences; 1,931,078,847 total letters
Query= NC_004002.1
Length=149955
Score E
Sequences producing significant alignments: (Bits) Value
seq284051 111 2e-19
seq283574 96.9 3e-15
>seq284051
Length=2145588
Score = 111 bits (122), Expect = 2e-19
Identities = 106/136 (78%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953
||||||||||||| || ||||| || ||||| || | ||| ||||| || |||| || |
Sbjct 1497777 CCTCATCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAACCCTCTCTTCT 1497836
Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013
| | |||||| || | ||||| || ||||| ||||| ||||| || ||||| ||||| |
Sbjct 1497837 TCAGCCAAAAGATAGATGCAAAGGAGCCGGAGAAGAAGATTCCTTCCACTGCTGCAAAAG 1497896
Query 14014 CTATTAATCGTTCTCC 14029
||| || ||||||||
Sbjct 1497897 CTACTACACGTTCTCC 1497912
Score = 91.5 bits (100), Expect = 1e-13
Identities = 79/98 (81%), Gaps = 0/98 (0%)
Strand=Plus/Plus
Query 13563 TTAGAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTA 13622
|| || || || ||||| || || ||||| | |||| || |||||||||||||| ||
Sbjct 1496286 TTTGACATTACTCCCATCTTCTGGTATTCTCCTACTCGCTTCTCAAAGAAGTTAGTCTTT 1496345
Query 13623 CCTTCCAGTGATATATTTTCCATAAAATCAAATGGATT 13660
||||||||||| ||||| ||||| || |||||||||||
Sbjct 1496346 CCTTCCAGTGAGATATTCTCCATGAAGTCAAATGGATT 1496383
>seq283574
Length=3212210
Score = 96.9 bits (106), Expect = 3e-15
Identities = 94/121 (78%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953
|||||||||| ||||| || || || || ||||| | ||| ||||| | || | || |
Sbjct 1560530 CCTCATCTCTGCTAATGAGCTCATTGGAGAATGTCAGTCCAGGCATAAGACCCCTCTTCT 1560471
Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013
| | ||||||||| |||||||| || || || ||||| ||||| || ||||||||||| |
Sbjct 1560470 TCAGCCAAAATATAGCAGCAAAAGAACCCGAGAAGAAGATTCCTTCCACTGCAGCAAAGG 1560411
Query 14014 C 14014
|
Sbjct 1560410 C 1560410
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 478009254508000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |