Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apalone_20spinifera_20[genbank_20GCA_5F000385615.1_202013-05-03] 286,620 sequences; 1,931,078,847 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq284051 111 2e-19 seq283574 96.9 3e-15 >seq284051 Length=2145588 Score = 111 bits (122), Expect = 2e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 ||||||||||||| || ||||| || ||||| || | ||| ||||| || |||| || | Sbjct 1497777 CCTCATCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAACCCTCTCTTCT 1497836 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 | | |||||| || | ||||| || ||||| ||||| ||||| || ||||| ||||| | Sbjct 1497837 TCAGCCAAAAGATAGATGCAAAGGAGCCGGAGAAGAAGATTCCTTCCACTGCTGCAAAAG 1497896 Query 14014 CTATTAATCGTTCTCC 14029 ||| || |||||||| Sbjct 1497897 CTACTACACGTTCTCC 1497912 Score = 91.5 bits (100), Expect = 1e-13 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 13563 TTAGAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTA 13622 || || || || ||||| || || ||||| | |||| || |||||||||||||| || Sbjct 1496286 TTTGACATTACTCCCATCTTCTGGTATTCTCCTACTCGCTTCTCAAAGAAGTTAGTCTTT 1496345 Query 13623 CCTTCCAGTGATATATTTTCCATAAAATCAAATGGATT 13660 ||||||||||| ||||| ||||| || ||||||||||| Sbjct 1496346 CCTTCCAGTGAGATATTCTCCATGAAGTCAAATGGATT 1496383 >seq283574 Length=3212210 Score = 96.9 bits (106), Expect = 3e-15 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 |||||||||| ||||| || || || || ||||| | ||| ||||| | || | || | Sbjct 1560530 CCTCATCTCTGCTAATGAGCTCATTGGAGAATGTCAGTCCAGGCATAAGACCCCTCTTCT 1560471 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 | | ||||||||| |||||||| || || || ||||| ||||| || ||||||||||| | Sbjct 1560470 TCAGCCAAAATATAGCAGCAAAAGAACCCGAGAAGAAGATTCCTTCCACTGCAGCAAAGG 1560411 Query 14014 C 14014 | Sbjct 1560410 C 1560410 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478009254508000