Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apalone_20spinifera_20[genbank_20GCA_5F000385615.1_202013-05-03] 286,620 sequences; 1,931,078,847 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq283574 123 3e-23 seq284051 120 4e-22 seq207829 105 9e-18 seq162555 102 1e-16 seq189952 87.8 2e-12 >seq283574 Length=3212210 Score = 123 bits (136), Expect = 3e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||||||||| ||||| | || ||||| || || ||||| ||||| || || | ||| | Sbjct 1560530 CCTCATCTCTGCTAATGAGCTCATTGGAGAATGTCAGTCCAGGCATAAGACCCCTCTTCT 1560471 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||||||||||| ||||| || || || |||||||||||||| ||||| ||||||| Sbjct 1560470 TCAGCCAAAATATAGCAGCAAAAGAACCCGAGAAGAAGATTCCTTCCACTGCAGCAAAGG 1560411 Query 42207 CAATAAGTCTCTCTCC 42222 ||| | |||||| || Sbjct 1560410 CAACCACTCTCTCCCC 1560395 Score = 96.9 bits (106), Expect = 5e-15 Identities = 79/96 (82%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 42563 ACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCCAGATATCATGA 42622 || |||||||| ||||| ||||| |||| ||||||||||||||| ||||| ||||| | Sbjct 1391956 ACCTCTTCTACAGTCCAGAATGAAGCTTGTGCCTTTTTATACATTTTCCACATATCCGGG 1391897 Query 42623 TATTGAATTGGGAAAATAACAAATCTATTTGGATTT 42658 ||||| | |||||| || ||||||| || |||||| Sbjct 1391896 TATTGCAGTGGGAAGATGACAAATCGATGAGGATTT 1391861 >seq284051 Length=2145588 Score = 120 bits (132), Expect = 4e-22 Identities = 99/121 (82%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 ||||||||||||| || | ||| || ||||| |||||||| ||||||| || | ||| | Sbjct 1497777 CCTCATCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAACCCTCTCTTCT 1497836 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | |||||||| ||||| ||||| || || || |||||||||||||| ||||| ||||| | Sbjct 1497837 TCAGCCAAAAGATAGATGCAAAGGAGCCGGAGAAGAAGATTCCTTCCACTGCTGCAAAAG 1497896 Query 42207 C 42207 | Sbjct 1497897 C 1497897 Score = 100 bits (110), Expect = 4e-16 Identities = 106/139 (76%), Gaps = 3/139 (2%) Strand=Plus/Plus Query 41718 TTTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTC---TTGAGACATAACTCCCATTT 41774 |||||||||| |||| | || ||| || ||| || ||||| |||||||| | Sbjct 1496245 TTTAAAAGTCTGCATCCAGAGTGAAAGAGTTATCTGTGGATTTTGACATTACTCCCATCT 1496304 Query 41775 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTTT 41834 | |||||||| || || || || || || || |||||||||||||||| ||| ||||| | Sbjct 1496305 TCTGGTATTCTCCTACTCGCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAGATATTCT 1496364 Query 41835 CCATGAAATCAAACGGATT 41853 ||||||| ||||| ||||| Sbjct 1496365 CCATGAAGTCAAATGGATT 1496383 >seq207829 Length=4015 Score = 105 bits (116), Expect = 9e-18 Identities = 126/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 70868 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATAT 70927 |||| || || |||||||| || || |||||| |||| | || || || || || || | Sbjct 1333 TCCACCCATAGAAATGCATGCTGGTGAGTTTGCCATAGTTGGGCTCTGCAATATGGATGT 1274 Query 70928 TCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 70987 ||| ||||| || ||||||||||| || || ||||| || |||||||| | || |||| Sbjct 1273 TCAGGGACTGGCTCTGATCGATGAAAGCGCCTCTGTCAGCTGCCATTTTGAGAATGGTCT 1214 Query 70988 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 71038 | || | |||||||| | || ||||| | |||| | || ||||||| Sbjct 1213 TCTGGGAGATTTCCCAGACTGTCTTATAGAGCTGCTTCAAGTCATCTGGAA 1163 >seq162555 Length=1600 Score = 102 bits (112), Expect = 1e-16 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 72022 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 72081 || |||||||| ||||||||||||||||| || || | || || || |||| || ||| Sbjct 663 ACCCGTTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAACAGGTCCCTGGCTCGCTGC 604 Query 72082 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 72141 ||||| || || || ||||| || || || || ||| | | ||||| |||||||||| Sbjct 603 TCCTCCTTCCCAGTGTTCTTCTTCAGGTCAAGAAACTCAAAGATATCCAAATGCCACGGC 544 Query 72142 TCCAAGTATATGGC 72155 |||| ||| ||||| Sbjct 543 TCCAGGTAGATGGC 530 >seq189952 Length=2645 Score = 87.8 bits (96), Expect = 2e-12 Identities = 127/177 (72%), Gaps = 2/177 (1%) Strand=Plus/Plus Query 71377 CCTGCATATGTATCGTATGGTCCTT-CTTTTTCGGCTAGTTCACAACTCGCCTCTAATGC 71435 ||| | || || || ||||| || | || ||||| | ||||| || || | || || || Sbjct 1589 CCTTCGTAAGTTTCATATGGCCCATACTCTTTCG-CAAGTTCGCAGCTGGATTCCAAAGC 1647 Query 71436 TCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAA 71495 || ||||||||||| || ||||||| || || || ||| || || ||||| ||||| Sbjct 1648 ACCGTAATAAATGGTCTCAAAAATCTGCTGGTTCAGCAATTGGGCCTCGGGGCTTTCAAA 1707 Query 71496 TGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGG 71552 ||||| | | || || ||||| ||||| | ||||| || ||||| || || || Sbjct 1708 GGGATATCTCATCAGGATGAACGCATCTGCCAGACCTTGCACCCCAATGCCAATGGG 1764 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 668734676031200