Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apalone_20spinifera_20[genbank_20GCA_5F000385615.1_202013-05-03] 286,620 sequences; 1,931,078,847 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq284675 167 5e-36 seq283819 145 2e-29 seq284051 102 2e-16 seq284814 91.5 3e-13 seq283960 86.0 1e-11 >seq284675 Length=1105255 Score = 167 bits (184), Expect = 5e-36 Identities = 157/200 (79%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||||||||| || || ||||| || || || | || |||||||| || || ||| Sbjct 341450 GTGGATTCTTTCTGGATGTTGTAGTCTGACAGGGTGCGCCCATCTTCTAGCTGCTTCCCA 341509 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || | |||||| ||||| ||||| || |||||||| ||||| || || || || Sbjct 341510 GCAAAGATCAACCTCTGCTGATCTGGAGGAATGCCTTCTTTGTCCTGGATTTTGGCCTTG 341569 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||| || || || ||||| ||||| || || ||||| ||||| | ||| Sbjct 341570 ACATTCTCAATGGTGTCACTGGGCTCTACTTCTAGCGTGATGGTCTTGCCAGTCAAGGTT 341629 Query 104543 TTTACAAATATCTGCATTTT 104562 |||||||| ||||||||||| Sbjct 341630 TTTACAAAGATCTGCATTTT 341649 >seq283819 Length=3435520 Score = 145 bits (160), Expect = 2e-29 Identities = 130/163 (80%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 78488 GCATTATGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCATC 78547 || ||||||||||| | |||| |||||||| || ||||| || || || || |||||| Sbjct 361513 GCTTTATGGTGGTACTTCCTCTCAAAAGGAATTGAGTACCTGGACACAATATTTTTCATC 361572 Query 78548 CTACGAAAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTTT 78607 || | ||||||||||| ||||| ||||| || || || ||||| ||||| |||||||| Sbjct 361573 CTGAGGAAGAAATTTAACCAAATCAGTTTCCTTCACGTCTATCACCATTTCACTATGTTC 361632 Query 78608 ACTTTGGGATGGATAGGTATTAAATGGTTCGCAGGAGGACAAG 78650 |||||| | ||||| ||||| || ||| | |||||||||||| Sbjct 361633 ACTTTGTGGTGGATTGGTATCAAGTGGGTTCCAGGAGGACAAG 361675 Score = 98.7 bits (108), Expect = 2e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 78778 GATTCAATTTCATATAGCTATAGGACATACTGCTATGTCTATCTATATAGATTGTCCTTA 78837 |||||| || ||| | || | || || || || |||||||| ||||| || ||||| | Sbjct 1909089 GATTCAGTTCCATGTGACTCTGGGCCACACAGCCATGTCTATTTATATCGACTGTCCCTT 1909148 Query 78838 TCCACGATGGGTGCAATGGGCTGTAATTATATACGCGGTTACTTTTATTATTTTGTTCGG 78897 || |||| |||| |||| |||||| || || || | || |||||| | |||||||| Sbjct 1909149 CCCTAAATGGATGCACTGGGGTGTAATGATCTATGCTATCACCTTTATTTTCTTGTTCGG 1909208 Query 78898 TAACTTTTACTTCCGTACATATAA 78921 |||||| |||| || |||||||| Sbjct 1909209 TAACTTCTACTATCGGACATATAA 1909232 >seq284051 Length=2145588 Score = 102 bits (112), Expect = 2e-16 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185 |||||| | |||| |||||||| || || ||||| || ||||| || || || ||||| Sbjct 1497912 GGAGAACGTGTAGTAGCTTTTGCAGCAGTGGAAGGAATCTTCTTCTCCGGCTCCTTTGCA 1497853 Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245 ||||||||||| ||||||| ||||| | ||||| ||| | ||||| ||||| ||| | Sbjct 1497852 TCTATCTTTTGGCTGAAGAAGAGAGGGTTAATGCCTGGACTCACTTTTTCTAATGAACTC 1497793 Query 269246 ATAAGCAGGGACGA 269259 || || || || || Sbjct 1497792 ATCAGTAGAGATGA 1497779 Score = 98.7 bits (108), Expect = 2e-15 Identities = 86/107 (80%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 268910 TTCTGTCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATA 268969 ||| | ||||| |||||||| ||||||| | | ||| || || |||||||| ||||| Sbjct 1500557 TTCAGCCAAGAAGTACAGATAACTGAAGCTCGCTTTTTCTATGGCTTCCAGATTGCTATG 1500498 Query 268970 GAAAATATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATAT 269016 |||||||| |||||||| ||||||||||| | ||||| ||||| || Sbjct 1500497 GAAAATATACATTCAGAAATGTACAGTCTGCTCATAGACACTTACAT 1500451 Score = 84.2 bits (92), Expect = 5e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 269495 GAAAATCCGTTTAGTTTTATGGAGAATATATCATTAGAAGGTAAGGCTAATTTCTTCGAG 269554 || ||||| ||| || ||||||||||| ||| | ||||| ||| |||| ||||| ||| Sbjct 1496386 GAGAATCCATTTGACTTCATGGAGAATATCTCACTGGAAGGAAAGACTAACTTCTTTGAG 1496327 Query 269555 AAGCGGGTAAGTAACTATCAGAAAATGGGTGTAATGTCTACTAAAGAAGAAAATATTTTC 269614 ||||| ||| | | || ||||| ||||| |||||||| | ||| || |||| Sbjct 1496326 AAGCGAGTAGGAGAATACCAGAAGATGGGAGTAATGTCAAAATCCACAGATAACTCTTTC 1496267 Query 269615 ACTACAGATGCAGAATTCTAA 269635 ||| |||||||| || ||| Sbjct 1496266 ACTCTGGATGCAGACTTTTAA 1496246 >seq284814 Length=7160389 Score = 91.5 bits (100), Expect = 3e-13 Identities = 91/118 (77%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 78491 TTATGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCATCCTA 78550 || |||||||||||| | || |||| ||| |||| | ||| ||||| ||||| | || Sbjct 4231167 TTGTGGTGGTATTATTTTTCCAAAGCAATTGAATTCACAGACACTATTTTCTTTGTACTG 4231226 Query 78551 CGAAAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTTTA 78608 | |||||| | |||||||| ||| || ||||||||||||||| |||||||||| Sbjct 4231227 AGGAAGAAAAACAGTCAAATTACTTTCCTTCATGTATATCATCATGCCACTATGTTTA 4231284 >seq283960 Length=8219379 Score = 86.0 bits (94), Expect = 1e-11 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 104372 TTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATT 104431 || |||||||| |||||||| || || | || ||||| | ||||| ||||||||||| Sbjct 1376965 TTTTGAATATTGTAGTCAGACAGCGTCCGTCCATCTTCCAACTGTTTGCCAGCAAAAATA 1376906 Query 104432 AGCCTCTGTTGATCAGGAGGTATTCCT 104458 || || |||||||||||||| |||||| Sbjct 1376905 AGTCTTTGTTGATCAGGAGGAATTCCT 1376879 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1147170098066960