Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apalone_20spinifera_20[genbank_20GCA_5F000385615.1_202013-05-03] 286,620 sequences; 1,931,078,847 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq283224 129 8e-25 >seq283224 Length=1912038 Score = 129 bits (142), Expect = 8e-25 Identities = 185/260 (71%), Gaps = 2/260 (1%) Strand=Plus/Minus Query 8735 GCACTCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCC 8794 ||| | |||| || |||| ||||| | ||| || |||||||| || |||||||| | Sbjct 1455502 GCAGTATTGATTATTTCAAAGCCCACTTTTCCACCAAAGGTGCTAGGCTTCCAGTACTCA 1455443 Query 8795 GGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGA 8854 || || ||||| | || |||| |||||||| | || || || || || || || | Sbjct 1455442 GGAGAACAGATAGCATTTCCCATAAGGCCTTTCAAAGAGAATGGTGCGCCAAGTTCCACC 1455383 Query 8855 ATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAAC 8914 ||| ||||||| || ||||| ||||| ||| | || || | | || | ||||| | Sbjct 1455382 ATGGTCTCACCAAAAATGGCACCAGGACGAGGCCTCTCTACTAGAAGGCCAGGGTACAGC 1455323 Query 8915 TCCACAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCT 8974 |||| ||| || |||||||| ||||| | | ||| || || ||||| ||||||||| Sbjct 1455322 TCCATAGCATCAATGTCTCCATAAAGCTCTTCTAATTCAGCTGCCATTTCTTTTTCTCCT 1455263 Query 8975 GT--TTTATTAATAAAAATA 8992 || | ||||||||| ||| Sbjct 1455262 GTAATAAATTAATAAACATA 1455243 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 705986332772800