Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apalone_20spinifera_20[genbank_20GCA_5F000385615.1_202013-05-03] 286,620 sequences; 1,931,078,847 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq149252 168 1e-37 seq284484 167 4e-37 seq251523 156 7e-34 seq283102 154 2e-33 seq222143 154 2e-33 seq285345 95.1 2e-15 seq284514 82.4 1e-11 >seq149252 Length=1813 Score = 168 bits (186), Expect = 1e-37 Identities = 183/243 (75%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||| ||||| | | || || |||||||| ||||| ||||| ||||| ||||| Sbjct 245 CGCTAAGCGCCATCGTAAAGTGCTCCGTGATAACATTCAAGGTATCACGAAGCCGGCTAT 304 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || || |||| || || || || ||||||||| | ||||| ||| |||||||||| | Sbjct 305 TCGCCGCTTGGCGCGCCGCGGCGGTGTCAAGCGTATTTCTGGCTTGATCTATGAAGAAAC 364 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | || ||||| | || || ||| ||| || | |||||| || || ||||| Sbjct 365 TCGCGGAGTCCTGAAGGTGTTTCTGGAGAACGTGATTCGCGATGCTGTCACTTACACCGA 424 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||||| || ||||||||||| ||||||| | |||||||| ||||||| || || Sbjct 425 ACACGCTAAGCGGAAGACTGTCACTGCCATGGACGTGGTCTATGCTCTGAAACGCCAGGG 484 Query 16672 CCG 16674 || Sbjct 485 TCG 487 >seq284484 Length=1466883 Score = 167 bits (184), Expect = 4e-37 Identities = 182/242 (75%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 ||||| || ||||| | ||||| ||||| || ||||| || || ||||||||||| Sbjct 232452 GCTAAACGACATCGGAAGGTGCTTCGTGATAATATTCAAGGTATTACAAAGCCAGCTATT 232393 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||||| | ||||||||||| ||||| |||||| | || ||| || | |||||||||| | Sbjct 232392 CGTCGCTTAGCTCGTCGTGGGGGAGTGAAGCGTATTTCGGGACTGATTTATGAAGAGACT 232333 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || |||||| | || || ||| ||| |||| |||||| | || |||||| Sbjct 232332 CGCGGAGTGTTGAAGGTTTTTCTGGAGAACGTGATCCGCGATGCTGTTACTTACACCGAG 232273 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || || ||||||||||| ||||| ||||||| | || ||||| ||||||| || || Sbjct 232272 CATGCCAAACGTAAGACAGTCACTGCCATGGACGTAGTTTATGCTCTGAAACGACAGGGT 232213 Query 16673 CG 16674 || Sbjct 232212 CG 232211 Score = 159 bits (176), Expect = 5e-35 Identities = 200/273 (73%), Gaps = 1/273 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||| ||||| | ||||| |||||||| ||||| ||||| || || ||||| Sbjct 1064623 CGCTAAGCGCCATCGGAAGGTGCTTCGTGATAACATTCAAGGTATCACAAAACCGGCTAT 1064564 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||| |||||||||| ||||| || |||||| | ||||| ||| | |||||||||| Sbjct 1064563 TCGTCGCTTGGCTCGTCGCGGTGGTGTAAAGCGTATTTCTGGGTTGATTTATGAAGAGAC 1064504 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| || |||| | ||||| | | || || | |||||| | || || || Sbjct 1064503 CCGTGGGGTGCTGAAAGTGTTCCTGGAAAATGTAATTCGAGATGCTGTGACTTACACTGA 1064444 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||||||||| ||||| || || | |||||| | || ||||| ||||||| || || Sbjct 1064443 GCACGCTAAACGGAAGACAGTGACTGCGATGGATGTAGTGTATGCTCTGAAACGCCAGGG 1064384 Query 16672 CCGTAAGATTTATGGTTTTGGAAG-TTAATCTT 16703 || | | ||||| || ||| | | |||||| Sbjct 1064383 TCGCACTCTCTATGGATTCGGAGGCTAAATCTT 1064351 Score = 132 bits (146), Expect = 8e-27 Identities = 190/268 (71%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||| ||| | | || ||||||||||||| || || || ||||||||||| Sbjct 1225701 CGCTAAGCGCCATAGGAAGGTACTGAGAGATAACATCCAGGGTATTACGAAGCCAGCTAT 1225642 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || ||| |||| || ||||| || || ||||| | || || | | || || |||| Sbjct 1225641 TCGCCGTTTGGCGCGCCGTGGGGGCGTGAAGCGCATTTCGGGTCTCATTTACGAGGAGAC 1225582 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | || ||||| | ||||| ||| ||| || | ||||| | || ||||| Sbjct 1225581 TCGGGGAGTGCTGAAGGTTTTCCTGGAGAACGTGATTCGAGATGCCGTTACTTACACCGA 1225522 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| || || | ||||| |||| |||||| |||| || ||||| Sbjct 1225521 GCACGCGAAGCGGAAGACGGTGACTGCTATGGACGTCGTTTATGCACTGAAGCGCCAAGG 1225462 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||||| | || || || ||| | ||| Sbjct 1225461 CCGTACCCTGTACGGATTCGGAGGCTAA 1225434 >seq251523 Length=7106 Score = 156 bits (172), Expect = 7e-34 Identities = 178/239 (74%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 ||||| |||||||||||||| ||||||||||| ||||| ||||| ||||||| ||||| Sbjct 13 CTTCGGGATAACATCCAAGGGATCACCAAGCCGGCTATTCGTCGCTTGGCTCGACGTGGA 72 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || |||||| | || |||||| | || ||||||| || | || |||| | ||| Sbjct 73 GGCGTGAAGCGTATTTCGGGATTGATTTACGAAGAGACCCGCGGAGTGCTGAAAGTGTTC 132 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 | ||| ||| || | || ||| || || |||||||| || || || ||||| ||| Sbjct 133 TTGGAGAACGTGATTCGGGACGCTGTCACTTACACCGAGCATGCCAAGCGAAAGACCGTC 192 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 || | |||||| | || ||||| |||| || || || |||| | ||||||||||| Sbjct 193 ACGGCGATGGATGTTGTTTATGCCCTGAAGCGCCAGGGTCGTACTCTCTATGGTTTTGG 251 >seq283102 Length=42139 Score = 154 bits (170), Expect = 2e-33 Identities = 195/268 (73%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||| || |||| | ||| || || |||||||| || ||||||||||| ||||| Sbjct 36255 CGCTAAGCGGCACCGCAAAGTTCTGCGGGACAACATCCAGGGTATCACCAAGCCCGCTAT 36196 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||||||||| || || |||||||| |||| || ||| |||| || |||| Sbjct 36195 CCGCCGCCTGGCTCGTCGCGGGGGTGTCAAGCGCATCTCCGGCTTGATCTACGAGGAGAC 36136 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || ||||| | ||||| | | || |||| || || | || ||||| Sbjct 36135 CCGCGGGGTGCTGAAGGTTTTCCTGGAAAATGTGATCCGCGACGCGGTGACTTACACCGA 36076 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| || || ||||||| | || || || ||||||| || || Sbjct 36075 GCACGCCAAGCGCAAGACCGTGACGGCCATGGACGTGGTGTACGCCCTGAAACGCCAGGG 36016 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||| | | ||||| || || ||||| Sbjct 36015 CCGCACCCTCTATGGCTTCGGGGGTTAA 35988 >seq222143 Length=4036 Score = 154 bits (170), Expect = 2e-33 Identities = 182/244 (75%), Gaps = 2/244 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| || || || |||| | || || || || |||||||| || ||||||||||| |||| Sbjct 2113 CGCCAAACGGCACCGCAAGGTC-CTCCGGGACAACATCCAGGGTATCACCAAGCCCGCTA 2171 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| || ||||||||||| || || |||||||| |||| || ||| |||| || |||| Sbjct 2172 TCCGCCGCCTGGCTCGTCGCGGGGGCGTCAAGCGCATCTCCGGCTTGATCTACGAGGAGA 2231 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | || |||||| | ||||| ||| ||| |||| ||||| | || |||| Sbjct 2232 CCCGCGGGGTGTTGAAGGTTTTCCTGGAGAACGTGATCCGCGATGCAGTGACTTACACCG 2291 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || ||||| || || ||||||| | || || || ||||||| || | Sbjct 2292 AGCACGCCAAGCGCAAGACGGTGACGGCCATGGACGTGGTGTACGCCCTGAAACGCCAGG 2351 Query 16671 GCCG 16674 |||| Sbjct 2352 GCCG 2355 >seq285345 Length=2888985 Score = 95.1 bits (104), Expect = 2e-15 Identities = 165/240 (69%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 ||||||||||| || || || |||||||||||| | || |||| | | |||| || || Sbjct 2646483 GATAACATCCAGGGTATTACGAAGCCAGCTATCTGCTGTTTGGCGCATTGTGGGGGTGTG 2646424 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 ||| | | || || | | ||||| |||| | | | || ||||| | ||||| || Sbjct 2646423 AAGTGCATTTCCGGTCTCATTTATGAGGAGACTTGGGGAGTGCTGAAGGTGTTCCTGGAG 2646364 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | ||| |||| |||||| | || || ||||| || || | || || || | | Sbjct 2646363 AACGTGATCCGAGATGCTGTTACTTACACAGAGCATGCGAAGCAGAAAACAGTGCCTGCT 2646304 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 || ||| | || |||||| |||| | |||||||||| | || || |||||| | ||| Sbjct 2646303 ATAGATGTAGTTTATGCACTGAAGCTCCAAGGCCGTACTCTGTACGGGTTTGGAGGCTAA 2646244 >seq284514 Length=4204319 Score = 82.4 bits (90), Expect = 1e-11 Identities = 77/97 (79%), Gaps = 1/97 (1%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 ||||| |||||||||||||| ||||||||||| ||||| | | | |||||| |||| Sbjct 3471842 CTTCGGGATAACATCCAAGGGATCACCAAGCCTGCTATTCATAGCTTGGCTCAATGTGG- 3471784 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 ||||| |||| | | || |||||| | || ||||||| Sbjct 3471783 GGAGTGAAGCATATTTCGGGATTGATTTACGAAGAGA 3471747 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 78813141327660