Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apalone_20spinifera_20[genbank_20GCA_5F000385615.1_202013-05-03] 286,620 sequences; 1,931,078,847 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq284051 98.7 1e-15 >seq284051 Length=2145588 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 21500 TCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCATTAATCCTCTCTTTTTT 21559 ||||| ||||| || | |||||||||||| || | || |||||||| |||||||| || Sbjct 1497779 TCATCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAACCCTCTCTTCTTC 1497838 Query 21560 AACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCCTCAACGGCAGCAAATGCA 21619 | |||||| || || ||||| | || || ||||| || || || || || ||||| || Sbjct 1497839 AGCCAAAAGATAGATGCAAAGGAGCCGGAGAAGAAGATTCCTTCCACTGCTGCAAAAGCT 1497898 Query 21620 ACTAATCGTTCACC 21633 |||| ||||| || Sbjct 1497899 ACTACACGTTCTCC 1497912 Score = 96.9 bits (106), Expect = 4e-15 Identities = 116/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 21122 TTTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCC 21181 || |||||||| || ||||| | | |||| |||||| ||||||||| | |||| Sbjct 1496241 TTCATTTAAAAGTCTGCATCCAGAGTGAAAGAGTTATCTGTGGATTTTGACATTACTCCC 1496300 Query 21182 ATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATA 21241 || || || || || | |||| || || || || || ||||||||||||| ||| ||| Sbjct 1496301 ATCTTCTGGTATTCTCCTACTCGCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAGATA 1496360 Query 21242 GATTCCATAAAATCAAATGGATTTTCAGATTTAAATAT 21279 ||||| || ||||||||||| || | ||| ||||| Sbjct 1496361 TTCTCCATGAAGTCAAATGGATTCTCTGCTTTGAATAT 1496398 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 529995132408800