Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apalone_20spinifera_20[genbank_20GCA_5F000385615.1_202013-05-03] 286,620 sequences; 1,931,078,847 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq284675 102 8e-17 seq285152 89.7 5e-13 >seq284675 Length=1105255 Score = 102 bits (112), Expect = 8e-17 Identities = 157/222 (71%), Gaps = 4/222 (2%) Strand=Plus/Minus Query 26762 AAACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGA 26821 ||| |||||||| | ||||||||||| || ||||| || | ||||| | ||| |||| Sbjct 341653 AAAGAAAATGCAGATCTTTGTAAAAACCTTGACTGGCAAGACCATCACGCTAGAAGTAGA 341594 Query 26822 ATCAAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCC 26881 | | |||||||| ||| | ||||| || || ||||||||||| || ||||| Sbjct 341593 GCCCAGTGACACCATTGAGAATGTCAAGGCCAAAATCCAGGACAAAGAAGGCATTCCTCC 341534 Query 26882 CGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAAC--GTCAGC 26939 ||||| || || | || | | || || || || ||||||| | | | |||| Sbjct 341533 AGATCAGCAGAGGTTGATCTTTGCTGGGAAGCAGCTAGAAGATGGGCGCACCCTGTCA-- 341476 Query 26940 GACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTG 26981 ||||| ||||| || |||||||| ||| | || |||||||| Sbjct 341475 GACTACAACATCCAGAAAGAATCCACTCTGCACTTGGTCCTG 341434 >seq285152 Length=1058326 Score = 89.7 bits (98), Expect = 5e-13 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 71717 GAGGGTAAAATTCACGGATACCTACGCATGTACTGGGCCAAAAAGATTCTCGAGTGGACT 71776 ||||| || || ||||| | ||| ||||||||||||||||| || || || |||||||| Sbjct 628727 GAGGGGAAGATGCACGGGTTCCTGCGCATGTACTGGGCCAAGAAAATCCTGGAGTGGACC 628786 Query 71777 CAAACTCCCGAGCAGGCGCTCGAGTATTCTATTTATCTAAACGATAGATACAGTCTCGAC 71836 | | |||||| |||| || ||| | | || || || |||||| | ||| || ||| Sbjct 628787 CGCTCCCCCGAGGAGGCCCTGAAGTTTGCCATCTACCTCAACGATCGCTACGAGCTGGAC 628846 Query 71837 GGTCGCGATCCTAACGGTTATGTCGGT 71863 || | || || | ||| ||||| ||| Sbjct 628847 GGCAGGGACCCCAGCGGCTATGTGGGT 628873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476947472286400