Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apalone_20spinifera_20[genbank_20GCA_5F000385615.1_202013-05-03] 286,620 sequences; 1,931,078,847 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq209978 105 2e-17 seq162555 86.0 2e-11 seq283893 84.2 6e-11 >seq209978 Length=1003 Score = 105 bits (116), Expect = 2e-17 Identities = 115/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 364111 GCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATG 364170 || ||| |||| |||| ||||||||| || || |||| ||||||||||| || || ||| Sbjct 606 GCCCAGCAGCTCTGGTATGCCATCATAGAGTCTCAGACCGAGACAGGAACCCCTTACATG 547 Query 364171 TTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAG 364230 |||||||| || || || || | ||| |||||||||| |||| || || || || Sbjct 546 TTGTACAAGGACTCTTGTAATAGGAAGAGCAACCAGCAGAACCTGGGAACCATCAAGTGC 487 Query 364231 AGCAACCTATGTACCGAGATTATTGAATACACC 364263 |||||||| || || || || | || |||||| Sbjct 486 AGCAACCTGTGCACAGAAATAGTGGAGTACACC 454 >seq162555 Length=1600 Score = 86.0 bits (94), Expect = 2e-11 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 363838 GGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTC 363897 ||||| ||||| || || || ||||| ||| ||||| |||||||||||||| || Sbjct 521 GGGGCCTTTGCCATCTACCTGGAGCCGTGGCATTTGGATATCTTTGAGTTTCTTGACCTG 580 Query 363898 CGGAAAAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTT 363957 ||| ||||| || || ||||| ||| || | || ||||||| ||| || ||| || Sbjct 581 AAGAAGAACACTGGGAAGGAGGAGCAGCGAGCCAGGGACCTGTTCTTTGCCCTCTGGATT 640 Query 363958 TCTGACCATTTTATGAAGCGCGTGGAG 363984 |||| | || ||||| || |||||| Sbjct 641 CCTGATCTCTTCATGAAACGGGTGGAG 667 >seq283893 Length=4807905 Score = 84.2 bits (92), Expect = 6e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 111390 ACAAATGCAAATGAACTTGCAGCAAAAAATGTAAAAATTTGGGATGGAAATGGATCACGT 111449 |||||||| || || || | |||||| || || |||||||||| |||||||||||| Sbjct 4761564 ACAAATGCTAAAGAGCTCTCTGCAAAAGGAGTGAAGATTTGGGATGCCAATGGATCACGT 4761505 Query 111450 GACTTTCTAGATTCAGTTGGTCTTGTCGACAACGAAGAAGGTGATCTCGGACCAGTTTAC 111509 ||||| | ||| | ||| | | | || ||||| ||| | |||||||| || Sbjct 4761504 GACTTCTTGGATAAACAAGGTTTCAATAAGAGAGAGGAAGGGGATTTGGGACCAGTGTAT 4761445 Query 111510 GGATTTCAATGGCGCCACTTTGGTGCAGACTACAAA 111545 || || || ||| | |||||||| || || |||||| Sbjct 4761444 GGTTTCCAGTGGAGACACTTTGGGGCTGAATACAAA 4761409 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1298567270136840