Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apalone_20spinifera_20[genbank_20GCA_5F000385615.1_202013-05-03] 286,620 sequences; 1,931,078,847 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq284675 109 5e-19 seq285152 89.7 4e-13 >seq284675 Length=1105255 Score = 109 bits (120), Expect = 5e-19 Identities = 149/206 (72%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 23984 AAACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGA 24043 ||| |||||||| | ||||||||||| || ||||| || | || || | ||||| || Sbjct 341653 AAAGAAAATGCAGATCTTTGTAAAAACCTTGACTGGCAAGACCATCACGCTAGAAGTAGA 341594 Query 24044 GGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCC 24103 | ||| |||||||| ||| | ||||| || || |||||||||||||| ||||| Sbjct 341593 GCCCAGTGACACCATTGAGAATGTCAAGGCCAAAATCCAGGACAAAGAAGGCATTCCTCC 341534 Query 24104 CGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAAC--GTCAGC 24161 ||||| ||||| |||| | | || ||||| || ||||||| | | | |||| Sbjct 341533 AGATCAGCAGAGGTTGATCTTTGCTGGGAAGCAGCTAGAAGATGGGCGCACCCTGTCA-- 341476 Query 24162 GATTATAACATTCAAAAAGAATCTAC 24187 || || ||||| || |||||||| || Sbjct 341475 GACTACAACATCCAGAAAGAATCCAC 341450 >seq285152 Length=1058326 Score = 89.7 bits (98), Expect = 4e-13 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 60952 GTTCATACGCGTATACTGGGCCaaaaaaaTATTGGAATGGACACCGACGCCCGAAGAGGC 61011 |||| | ||| | ||||||||||| ||||| |||| ||||| | | ||||| ||||| Sbjct 628744 GTTCCTGCGCATGTACTGGGCCAAGAAAATCCTGGAGTGGACCCGCTCCCCCGAGGAGGC 628803 Query 61012 ACTGAACCGTGCGATCTACCTCAACCAGCGATACGCTGTCGACGGTTGCGATCCCAGCGG 61071 ||||| ||| |||||||||||| | || |||| | ||||| | || |||||||| Sbjct 628804 CCTGAAGTTTGCCATCTACCTCAACGATCGCTACGAGCTGGACGGCAGGGACCCCAGCGG 628863 Query 61072 TTATGTAGG 61080 ||||| || Sbjct 628864 CTATGTGGG 628872 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428434155626100