Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apalone_20spinifera_20[genbank_20GCA_5F000385615.1_202013-05-03] 286,620 sequences; 1,931,078,847 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq284675 86.0 5e-12 >seq284675 Length=1105255 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| |||| ||||| ||||| || || || ||||||||||| | | Sbjct 341420 CCACCCCGGAGGCGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCTGAC 341479 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | || || | || || || ||| | || | || ||| || || ||| Sbjct 341480 AGGGTGCGCCCATCTTCTAGCTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGAGGA 341539 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | ||| |||||||| |||| ||| || | | | ||||| | |||||| | Sbjct 341540 ATGCCTTCTTTGTCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACT 341599 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTT 16938 || | |||||||| || || |||| ||||| ||||| ||||||||||| Sbjct 341600 TCTAGCGTGATGGTCTTGCCAGTCAAGGTTTTTACAAAGATCTGCATTTT 341649 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 403672954193800