Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apalone_20spinifera_20[genbank_20GCA_5F000385615.1_202013-05-03] 286,620 sequences; 1,931,078,847 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq285202 102 5e-17 seq284839 100 2e-16 seq284600 98.7 7e-16 seq283078 96.9 2e-15 seq285650 95.1 8e-15 seq258880 95.1 8e-15 seq285970 93.3 3e-14 seq285514 89.7 3e-13 seq284566 89.7 3e-13 seq283930 87.8 1e-12 seq284675 86.0 4e-12 seq67442 86.0 4e-12 >seq285202 Length=2628881 Score = 102 bits (112), Expect = 5e-17 Identities = 71/81 (88%), Gaps = 5/81 (6%) Strand=Plus/Minus Query 25916 GGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTAATCCTTTCATGC 25970 |||||||||||||||||||||||| ||||| || ||||||||| |||| ||||||| Sbjct 997841 GGCTGTGGTTTCGCTAGATAGTAGGTAGGGACAGTGGGAATCTCGTTCATCCATTCATGC 997782 Query 25971 GCGTCACTAATTAGATGACGA 25991 | ||||||||||||||||||| Sbjct 997781 GTGTCACTAATTAGATGACGA 997761 >seq284839 Length=4167973 Score = 100 bits (110), Expect = 2e-16 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 19949 CTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGG 20008 |||||||||||||||||||||||||||||| |||||||||||| |||||||||||| | Sbjct 3769299 CTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTGACTATCGGTCTCGTGC 3769358 Query 20009 TAATATTTAGCCTTA 20023 |||||||||||| Sbjct 3769359 CGGTATTTAGCCTTA 3769373 >seq284600 Length=7302563 Score = 98.7 bits (108), Expect = 7e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| |||||||||||| ||||| |||||| Sbjct 4125239 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTGACTATCAGTCTCGT 4125180 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 4125179 GCCGGTATTTAGCCTTA 4125163 >seq283078 Length=80167 Score = 96.9 bits (106), Expect = 2e-15 Identities = 77/93 (83%), Gaps = 5/93 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||| ||||||||||| ||||| || | |||| | Sbjct 11171 AAGCCCGTTCCCTTGGCTGTGGTTTCACTAGATAGTAGGTAGGGGCAGTGGGAGTCTCTT 11230 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGAC 25989 | ||| |||| | || |||||||||||||||| Sbjct 11231 TCGTCCATTCACGTGCATCACTAATTAGATGAC 11263 >seq285650 Length=2898381 Score = 95.1 bits (104), Expect = 8e-15 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| | |||||||||| || ||||||||| Sbjct 290188 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTATGGTACTTGTTGACTGTCGGTCTCGT 290129 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 290128 GCCGGTATTTAGCCTTA 290112 >seq258880 Length=4357 Score = 95.1 bits (104), Expect = 8e-15 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||| ||||||||||||||||||||| | |||||||||| |||||||||||| Sbjct 954 CTCTCTCTTCGAAGTTCTTTTCAACTTTCCCTTATGGTACTTGTTGACTATCGGTCTCGT 895 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 894 GCCGGTATTTAGCCTTA 878 >seq285970 Length=338642 Score = 93.3 bits (102), Expect = 3e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| | ||||||||| |||||||||||| Sbjct 209377 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTTCAGTACTTGTTGACTATCGGTCTCGT 209318 Query 20007 GGTAATATTTAGCCTT 20022 | ||||||||||| Sbjct 209317 GCCGGTATTTAGCCTT 209302 >seq285514 Length=2680515 Score = 89.7 bits (98), Expect = 3e-13 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 19945 TTCTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTC 20004 ||||||||||||||||||||||||||||||| || | |||||| || || |||||||| Sbjct 633930 TTCTCTCTCTTCAAAGTTCTTTTCAACTTTCTCTTATGGTACTCTTTGACTGTCGGTCTC 633989 Query 20005 GCGGTAATATTTAGCCTTA 20023 | | | |||||||||||| Sbjct 633990 GTGCCAGTATTTAGCCTTA 634008 >seq284566 Length=390937 Score = 89.7 bits (98), Expect = 3e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||| ||||||||||||||| | |||||||||| |||| ||||| | Sbjct 345947 CTCTCTCTTCAAAGTTTTTTTCAACTTTCCCTTAGGGTACTTGTTGACTATTGGTCTTGT 346006 Query 20007 GGTAATATTTAGCCTTA 20023 | | |||||||||||| Sbjct 346007 GCCAGTATTTAGCCTTA 346023 >seq283930 Length=212238 Score = 87.8 bits (96), Expect = 1e-12 Identities = 68/80 (85%), Gaps = 1/80 (1%) Strand=Plus/Plus Query 19945 TTCTCTCTC-TTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCT 20003 |||||||| ||||||||||||||||||||||||| |||||||||||| |||| ||||| Sbjct 123139 TTCTCTCTGGTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTGACTATTGGTCT 123198 Query 20004 CGCGGTAATATTTAGCCTTA 20023 | | |||||||||||| Sbjct 123199 TGTGTCGGTATTTAGCCTTA 123218 >seq284675 Length=1105255 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/232 (68%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | |||| ||||| || |||||| || || || || ||||| || | Sbjct 341418 TACCACCCCGGAGGCGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCTG 341477 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 ||| || | || |||| || || || ||||| || | | || ||||| | | Sbjct 341478 ACAGGGTGCGCCCATCTTCTAGCTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGAG 341537 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | ||||||||||||| ||||| ||| ||||||| | || || | || | Sbjct 341538 GAATGCCTTCTTTGTCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCTA 341597 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 |||||| || || || || || ||||||||||| || || |||||||| || Sbjct 341598 CTTCTAGCGTGATGGTCTTGCCAGTCAAGGTTTTTACAAAGATCTGCATTTT 341649 >seq67442 Length=237 Score = 86.0 bits (94), Expect = 4e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||| |||||||||||||||||||||||| || || ||||||||| |||| ||||||| Sbjct 87 CTCTGTCTTCAAAGTTCTTTTCAACTTTCGCTTACAGTACTTGTTGACTATTGGTCTCGT 146 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 147 GCCGGTATTTAGCCTTA 163 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 333777168721220