Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apalone_20spinifera_20[genbank_20GCA_5F000385615.1_202013-05-03] 286,620 sequences; 1,931,078,847 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq207829 114 2e-20 seq283574 111 2e-19 seq275374 105 8e-18 seq162555 100 4e-16 seq189952 91.5 2e-13 seq254492 84.2 3e-11 >seq207829 Length=4015 Score = 114 bits (126), Expect = 2e-20 Identities = 128/171 (75%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 61917 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 61976 |||| || || |||||||| || || |||||| ||| | || ||||| |||||||| | Sbjct 1333 TCCACCCATAGAAATGCATGCTGGTGAGTTTGCCATAGTTGGGCTCTGCAATATGGATGT 1274 Query 61977 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATAATCGTCT 62036 ||| || || || ||||||||||| || || ||||| || |||||||| | ||| |||| Sbjct 1273 TCAGGGACTGGCTCTGATCGATGAAAGCGCCTCTGTCAGCTGCCATTTTGAGAATGGTCT 1214 Query 62037 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 62087 | || | |||||||| | || ||||| | |||| | || ||||||| Sbjct 1213 TCTGGGAGATTTCCCAGACTGTCTTATAGAGCTGCTTCAAGTCATCTGGAA 1163 >seq283574 Length=3212210 Score = 111 bits (122), Expect = 2e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 |||| ||||| ||||| | || ||||| || || ||||| ||||| || || | ||| | Sbjct 1560530 CCTCATCTCTGCTAATGAGCTCATTGGAGAATGTCAGTCCAGGCATAAGACCCCTCTTCT 1560471 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 | ||||||||||| | ||||| || || || ||||| |||||||| ||||| ||||||| Sbjct 1560470 TCAGCCAAAATATAGCAGCAAAAGAACCCGAGAAGAAGATTCCTTCCACTGCAGCAAAGG 1560411 Query 32803 CAATAAGTCTCTCTCC 32818 ||| | |||||| || Sbjct 1560410 CAACCACTCTCTCCCC 1560395 Score = 86.0 bits (94), Expect = 8e-12 Identities = 79/100 (79%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 33158 CACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATG 33217 ||| ||||| || ||||| ||||| || | ||||||||||||||| ||||| || || | Sbjct 1391957 CACCTCTTCTACAGTCCAGAATGAAGCTTGTGCCTTTTTATACATTTTCCACATATCCGG 1391898 Query 33218 ATATTGAATTGGAAAAATAACAAATCTATTTGGATTTTTT 33257 ||||| | ||| || || ||||||| || ||||||||| Sbjct 1391897 GTATTGCAGTGGGAAGATGACAAATCGATGAGGATTTTTT 1391858 >seq275374 Length=4436 Score = 105 bits (116), Expect = 8e-18 Identities = 123/166 (74%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 63810 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 63869 |||| || | ||| || ||||||||||| | || || || || || || |||||||| | Sbjct 1465 CACTGAACACTTTCTTGGTTTCTTTGTGCAAGTTGGAGACCGCAATCCTTGCGGCTAGGA 1524 Query 63870 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 63929 ||||||| || || |||| ||||| || || ||| | || || ||||| || |||| Sbjct 1525 TGGCATAGTCGGGGTGTTTGGTAGTGAGGGTTGCAGCTGTCTCAGCAGCCAGTGTATCCA 1584 Query 63930 ATTCTACCGTTGTTACACCATTATATATTCCTTGGATAACCTTCAT 63975 | || || || || |||||| | |||| || ||||| |||||||| Sbjct 1585 ACTCCACTGTGGTGACACCACTGTATAGACCCTGGATTACCTTCAT 1630 >seq162555 Length=1600 Score = 100 bits (110), Expect = 4e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 63067 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 63126 || ||| |||||||| ||||||||||||||||| || || | || || || |||| || Sbjct 667 CTCCACCCGTTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAACAGGTCCCTGGCTCG 608 Query 63127 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63186 || ||||| || || || ||||| || || || || ||| | | ||||| ||||||| Sbjct 607 CTGCTCCTCCTTCCCAGTGTTCTTCTTCAGGTCAAGAAACTCAAAGATATCCAAATGCCA 548 Query 63187 CGGTTCCAAGTATATGGC 63204 ||| |||| ||| ||||| Sbjct 547 CGGCTCCAGGTAGATGGC 530 >seq189952 Length=2645 Score = 91.5 bits (100), Expect = 2e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 62426 CCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCA 62485 ||| | || || || ||||| || | || | || ||||| || || | || || ||| Sbjct 1589 CCTTCGTAAGTTTCATATGGCCCATACTCTTTCGCAAGTTCGCAGCTGGATTCCAAAGCA 1648 Query 62486 CCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAAAT 62545 |||||||||||||| || || |||| || || || ||| || || |||| ||||| Sbjct 1649 CCGTAATAAATGGTCTCAAAAATCTGCTGGTTCAGCAATTGGGCCTCGGGGCTTTCAAAG 1708 Query 62546 GGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTA 62605 ||||| | | || || ||||| ||||| | ||||| || ||||| || || || | | Sbjct 1709 GGATATCTCATCAGGATGAACGCATCTGCCAGACCTTGCACCCCAATGCCAATGGGGCGA 1768 Query 62606 TGTCTCTTATTAGAGATTTCAGC 62628 || | || || ||||| || || Sbjct 1769 TGGCGTTTGTTGGAGATCTCGGC 1791 >seq254492 Length=3707 Score = 84.2 bits (92), Expect = 3e-11 Identities = 114/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 63446 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAAC 63505 || |||| ||| | || | || || ||||| || | ||| ||||| || ||||||||| Sbjct 598 CTGGACAGTTGAGGTCGGTTGGTGCCAGCATTGAAGAGGGTGGGAGATGCATGAGTAAAC 657 Query 63506 CATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATT 63565 || || ||||| || || ||||| || ||||| || | ||||| || || || ||| Sbjct 658 CACTTCTCAGACAGGAGGTTGTATGTTTCAATTGCAGCATCTATGTCATTTTTGTGGATT 717 Query 63566 CCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCA 63604 || |||| || | ||| | |||||| || || | |||| Sbjct 718 CCCACTGAAACCCTCATCAGCATGTGTTGGGGGCGTTCA 756 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 631361854952000