Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apalone_20spinifera_20[genbank_20GCA_5F000385615.1_202013-05-03] 286,620 sequences; 1,931,078,847 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq284675 118 9e-22 >seq284675 Length=1105255 Score = 118 bits (130), Expect = 9e-22 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || |||||||| || ||||| || || ||||||| | ||||| ||| | Sbjct 341647 AATGCAGATCTTTGTAAAAACCTTGACTGGCAAGACCATCACGCTAGAAGTAGAGCCCAG 341588 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 |||||| || ||| | ||| |||||| ||||||||||| ||||| || || || Sbjct 341587 TGACACCATTGAGAATGTCAAGGCCAAAATCCAGGACAAAGAAGGCATTCCTCCAGATCA 341528 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || ||||| || || || ||||||||| ||||| || || ||||| Sbjct 341527 GCAGAGGTTGATCTTTGCTGGGAAGCAGCTAGAAGATGGGCGCACCCTGTCAGACTACAA 341468 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || ||||||||||| || || || || || Sbjct 341467 CATCCAGAAAGAATCCACTCTGCACTTGGTCCT 341435 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 431814306755300