Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apalone_20spinifera_20[genbank_20GCA_5F000385615.1_202013-05-03] 286,620 sequences; 1,931,078,847 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq284675 111 1e-19 >seq284675 Length=1105255 Score = 111 bits (122), Expect = 1e-19 Identities = 169/240 (70%), Gaps = 3/240 (1%) Strand=Plus/Minus Query 22210 TTTGTAAAGA---TGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAA 22266 ||| |||||| |||| || ||||| ||||| || || || || || |||| || ||| Sbjct 341658 TTTATAAAGAAAATGCAGATCTTTGTAAAAACCTTGACTGGCAAGACCATCACGCTAGAA 341599 Query 22267 GTGGAAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATT 22326 || || ||| || ||| | || || |||| ||||| || ||||| || || ||| Sbjct 341598 GTAGAGCCCAGTGACACCATTGAGAATGTCAAGGCCAAAATCCAGGACAAAGAAGGCATT 341539 Query 22327 CCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTC 22386 || || ||||| || | | || ||||| || || ||| |||| ||| |||||| | Sbjct 341538 CCTCCAGATCAGCAGAGGTTGATCTTTGCTGGGAAGCAGCTAGAAGATGGGCGCACCCTG 341479 Query 22387 TCCGATTACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || |||||||| || ||||||||||| | || || || |||| | || || ||| Sbjct 341478 TCAGACTACAACATCCAGAAAGAATCCACTCTGCACTTGGTCCTGCGCCTCCGGGGTGGT 341419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418261814020300