Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apalone_20spinifera_20[genbank_20GCA_5F000385615.1_202013-05-03] 286,620 sequences; 1,931,078,847 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq284675 163 5e-35 seq285824 102 1e-16 seq130642 86.0 1e-11 >seq284675 Length=1105255 Score = 163 bits (180), Expect = 5e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||||| |||||||| || ||||| ||||| |||||||| || || || Sbjct 341420 CCACCCCGGAGGCGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCTGAC 341479 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||||||||| ||||||||| || || || | || || || || || ||| Sbjct 341480 AGGGTGCGCCCATCTTCTAGCTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGAGGA 341539 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 |||||||| ||||| || || || |||||||| ||| |||||||| | |||||| Sbjct 341540 ATGCCTTCTTTGTCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACT 341599 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || | |||||||| || || || | ||| || || || ||||||||| Sbjct 341600 TCTAGCGTGATGGTCTTGCCAGTCAAGGTTTTTACAAAGATCTGCATT 341647 >seq285824 Length=1342290 Score = 102 bits (112), Expect = 1e-16 Identities = 87/105 (83%), Gaps = 2/105 (2%) Strand=Plus/Plus Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTC 68416 ||||||||||| |||||||| ||||||||| |||||||||||| ||| | || || || Sbjct 583235 CCTTCCTTGTCCTGAATCTTGGCCTTGACGTTCTCGATGGTGTC-GCTGGGCTCCACCTC 583293 Query 68417 CAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | |||||||||||| || || ||||| || ||||| |||||||| Sbjct 583294 GAGGGTGATGGTTTTGCCTGTCAGGGTTTTCACGAAGATCTGCAT 583338 >seq130642 Length=457 Score = 86.0 bits (94), Expect = 1e-11 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 68340 TGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTG 68399 || ||||| || ||||||||||| ||||| || ||||| || || || ||| ||||| Sbjct 455 TGCTGGTCAGGGGGAATGCCTTCTTTGTCCTGGATCTTGGCTTTCACATTCTCAATGGTA 396 Query 68400 TCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGC 68459 || | ||| || || ||||||||||| || || || || ||||| || || |||||| Sbjct 395 TCACTGGGTTCAACCTCTAAGGTGATGGTCTTGCCAGTCAGAGTCTTCACAAAGATCTGC 336 Query 68460 AT 68461 || Sbjct 335 AT 334 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 918320457346400