Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apalone_20spinifera_20[genbank_20GCA_5F000385615.1_202013-05-03] 286,620 sequences; 1,931,078,847 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq284675 100 2e-16 seq130642 82.4 6e-11 >seq284675 Length=1105255 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || || || | || || || || | || |||||||| || |||||||| || Sbjct 341417 ATACCACCCCGGAGGCGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCT 341476 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || |||||| || || || ||||| |||| | | ||| || || ||| Sbjct 341477 GACAGGGTGCGCCCATCTTCTAGCTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGA 341536 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||||||||||||||| || || || | | |||| |||||| ||| || Sbjct 341537 GGAATGCCTTCTTTGTCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCT 341596 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | || ||||| |||| ||||||||||| |||||||| Sbjct 341597 ACTTCTAGCGTGATGGTCTTGCCAGTCAAGGTTTTTACAAAGATCTGCAT 341646 >seq130642 Length=457 Score = 82.4 bits (90), Expect = 6e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 114260 CTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGT 114319 ||| ||||| || ||||||||||||||||| ||||| ||| | | |||| ||| Sbjct 456 CTGCTGGTCAGGGGGAATGCCTTCTTTGTCCTGGATCTTGGCTTTCACATTCTCAATGGT 397 Query 114320 GTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTG 114379 || ||| ||| || || | ||| | || ||||| |||||||| || ||||| ||||| Sbjct 396 ATCACTGGGTTCAACCTCTAAGGTGATGGTCTTGCCAGTCAGAGTCTTCACAAAGATCTG 337 Query 114380 CATGG 114384 ||||| Sbjct 336 CATGG 332 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418666794391440