Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apalone_20spinifera_20[genbank_20GCA_5F000385615.1_202013-05-03] 286,620 sequences; 1,931,078,847 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq162555 105 1e-17 seq284051 98.7 2e-15 seq283574 87.8 3e-12 seq209978 86.0 1e-11 >seq162555 Length=1600 Score = 105 bits (116), Expect = 1e-17 Identities = 111/146 (76%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 245003 ACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGC 245062 |||| | ||||||||| || || ||||||||||| ||| |||||||||| | |||| Sbjct 663 ACCCGTTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAACAGGTCCCTGGCTCGCTGC 604 Query 245063 TCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGC 245122 || ||| |||||||||||| |||| || | ||| ||||||| || | ||||| ||| Sbjct 603 TCCTCCTTCCCAGTGTTCTTCTTCAGGTCAAGAAACTCAAAGATATCCAAATGCCACGGC 544 Query 245123 TCCATGTAGACAGCGAGGGCGCCGGG 245148 |||| ||||| || | ||| || || Sbjct 543 TCCAGGTAGATGGCAAAGGCCCCAGG 518 >seq284051 Length=2145588 Score = 98.7 bits (108), Expect = 2e-15 Identities = 96/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 42708 GTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGG 42767 ||||| ||| | || || || || ||||||||||| ||| |||| || || ||||| ||| Sbjct 1497900 GTAGCTTTTGCAGCAGTGGAAGGAATCTTCTTCTCCGGCTCCTTTGCATCTATCTTTTGG 1497841 Query 42768 CTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGAC 42827 || ||| ||| | || ||||| |||||||| || || || ||||||||||| || || Sbjct 1497840 CTGAAGAAGAGAGGGTTAATGCCTGGACTCACTTTTTCTAATGAACTCATCAGTAGAGAT 1497781 Query 42828 GAGG 42831 |||| Sbjct 1497780 GAGG 1497777 >seq283574 Length=3212210 Score = 87.8 bits (96), Expect = 3e-12 Identities = 103/137 (75%), Gaps = 2/137 (1%) Strand=Plus/Plus Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755 || ||||| |||| |||||| | || || || || |||||||||||||| | || || Sbjct 1560395 GGGGAGAGAGTGGTTGCCTTTGCTGCAGTGGAAGGAATCTTCTTCTCGGGTTCTTTTGCT 1560454 Query 42756 TCCATCTTCTGGCTCAAGCAGAAGGTGTC-GATGCCCGGACTCACCTTCTCGAACGAACT 42814 | || || ||||| ||| || ||| ||| ||||| ||||| || ||||| || || || Sbjct 1560455 GCTATATTTTGGCTGAAGAAG-AGGGGTCTTATGCCTGGACTGACATTCTCCAATGAGCT 1560513 Query 42815 CATCAGCAGGGACGAGG 42831 ||| ||||| || |||| Sbjct 1560514 CATTAGCAGAGATGAGG 1560530 >seq209978 Length=1003 Score = 86.0 bits (94), Expect = 1e-11 Identities = 91/119 (76%), Gaps = 1/119 (1%) Strand=Plus/Plus Query 244704 CCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGG 244763 ||||||| || | ||||||||| || || || ||||| ||||| ||||||||||||| Sbjct 438 CCACCTCGTCTTTGCTGGTGTACTCCACTATTTCTGTGCACAGGTTGCTGCACTTGATGG 497 Query 244764 TGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATG-AAGGG 244821 | ||||||| ||| || ||| ||| || || | ||||||||| | |||| ||||| Sbjct 498 TTCCCAGGTTCTGCTGGTTGCTCTTCCTATTACAAGAGTCCTTGTACAACATGTAAGGG 556 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 940955868731200