Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apalone_20spinifera_20[genbank_20GCA_5F000385615.1_202013-05-03] 286,620 sequences; 1,931,078,847 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq283893 86.0 5e-12 >seq283893 Length=4807905 Score = 86.0 bits (94), Expect = 5e-12 Identities = 75/88 (85%), Gaps = 8/88 (9%) Strand=Plus/Plus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAA--CT--GAGTAAGATCTAAGG 114387 |||||||| || ||||||||||||| ||||||||||||| || |||| |||| |||| Sbjct 3113615 CATGTATTAGCACTAGAATTACCACAGTTATCCAAGTAAGGCTTGGAGT--GATCAAAGG 3113672 Query 114388 AACCAAAACTGATATATTGAGCCATTCG 114415 ||||| ||||||| || ||||||||||| Sbjct 3113673 AACCATAACTGATTTAATGAGCCATTCG 3113700 Score = 86.0 bits (94), Expect = 5e-12 Identities = 75/88 (85%), Gaps = 8/88 (9%) Strand=Plus/Plus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAA--CT--GAGTAAGATCTAAGG 115584 |||||||| || ||||||||||||| ||||||||||||| || |||| |||| |||| Sbjct 3113615 CATGTATTAGCACTAGAATTACCACAGTTATCCAAGTAAGGCTTGGAGT--GATCAAAGG 3113672 Query 115585 AACCAAAACTGATATATTGAGCCATTCG 115612 ||||| ||||||| || ||||||||||| Sbjct 3113673 AACCATAACTGATTTAATGAGCCATTCG 3113700 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395675389069240