Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apalone_20spinifera_20[genbank_20GCA_5F000385615.1_202013-05-03] 286,620 sequences; 1,931,078,847 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq283224 127 3e-24 >seq283224 Length=1912038 Score = 127 bits (140), Expect = 3e-24 Identities = 168/233 (72%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 9736 GTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAG 9795 || ||||| |||| |||||| ||| |||| || || || | || || || | || ||| Sbjct 1453189 GTAGTTTGGAACAGCTGCTCATCATCCCACTCTGGATGCACCTGCTTAAGGATGTCACAG 1453130 Query 9796 ACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAACCA 9855 || | ||| || ||||| |||||||| ||||| |||||||||||||| || || |||||| Sbjct 1453129 ACTCGGTTATGCTCTCTGAGCCATATTGTGGCATACATCATTAAACCTGGGACCAAACCA 1453070 Query 9856 AACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCATACAGCATA 9915 ||||| || | || || | ||| |||| | || || || | || | |||| ||| Sbjct 1453069 AACACCTCCTGGCCTACAGAAAATCGCAAGTGCTCAGGAACATGAGGAGGGTACATCATT 1453010 Query 9916 TGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAACCTG 9968 | | || || || || || ||||| || |||||||| || | ||| | ||| Sbjct 1453009 TCTGCTTGTGTGTCCTTCACAGTGGGAGGGTACATTTCTCCATGAATCAGCTG 1452957 Score = 125 bits (138), Expect = 1e-23 Identities = 197/282 (70%), Gaps = 0/282 (0%) Strand=Plus/Minus Query 8894 GGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGGTTTTCACGATGTCT 8953 ||||| ||||||||||| || ||||| || | || || || || | || || Sbjct 1455544 GGACAACCCTTCACATTATTGCAGATGAGCTTTTGTAGGGAGGCAGTATTGATTATTTCA 1455485 Query 8954 AAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACGTTC 9013 || || || | || || |||||||| || ||||||||| | || || ||||| | || Sbjct 1455484 AAGCCCACTTTTCCACCAAAGGTGCTAGGCTTCCAGTACTCAGGAGAACAGATAGCATTT 1455425 Query 9014 GCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAGATG 9073 |||| || |||||||| || || || || || || || | ||| ||||||| || ||| Sbjct 1455424 CCCATAAGGCCTTTCAAAGAGAATGGTGCGCCAAGTTCCACCATGGTCTCACCAAAAATG 1455365 Query 9074 GCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACGTCG 9133 ||||| ||||| || | || || | | ||||| ||| || || | ||| || | ||| Sbjct 1455364 GCACCAGGACGAGGCCTCTCTACTAGAAGGCCAGGGTACAGCTCCATAGCATCAATGTCT 1455305 Query 9134 CCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 ||||| || |||| || || || || || || || || ||| Sbjct 1455304 CCATAAAGCTCTTCTAATTCAGCTGCCATTTCTTTTTCTCCT 1455263 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 721135063508000