Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apalone_20spinifera_20[genbank_20GCA_5F000385615.1_202013-05-03] 286,620 sequences; 1,931,078,847 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq284675 120 3e-22 seq285083 98.7 1e-15 >seq284675 Length=1105255 Score = 120 bits (132), Expect = 3e-22 Identities = 159/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 38238 aaaaaaaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAG 38297 || |||||||| || || |||||||| | || ||||| |||||||| | || || ||| Sbjct 341652 AAGAAAATGCAGATCTTTGTAAAAACCTTGACTGGCAAGACCATCACGCTAGAAGTAGAG 341593 Query 38298 GCCACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC 38357 ||| |||| | | | | | || | ||||||| |||||||| || ||||| | Sbjct 341592 CCCAGTGACACCATTGAGAATGTCAAGGCCAAAATCCAGGACAAAGAAGGCATTCCTCCA 341533 Query 38358 GACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGAC 38417 || || ||| || | || | || || || ||||| || || | ||||||||| ||| Sbjct 341532 GATCAGCAGAGGTTGATCTTTGCTGGGAAGCAGCTAGAAGATGGGCGCACCCTGTCAGAC 341473 Query 38418 TACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||||||||| || ||| | || ||||| ||||| ||||| Sbjct 341472 TACAACATCCAGAAAGAATCCACTCTGCACTTGGTCCTGCG 341432 >seq285083 Length=8456797 Score = 98.7 bits (108), Expect = 1e-15 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 38350 TTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCC 38409 ||||| | ||||| ||| |||| || | || ||||| |||||||| || | ||||||| Sbjct 2095803 TTCCCCCTGACCAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCC 2095744 Query 38410 TCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCG 38469 | ||||||||| ||||||||||| | || || ||| | ||||||||| ||||||| | Sbjct 2095743 TATCCGACTACAATATCCAAAAGGAGTCCACCCTCCATCTTGTGCTGCGTCTGAGAGGTG 2095684 Query 38470 GC 38471 || Sbjct 2095683 GC 2095682 Score = 93.3 bits (102), Expect = 4e-14 Identities = 89/114 (78%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 38358 GACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGAC 38417 ||||| ||| |||| || | || ||||| |||||||| || | |||||||| ||| Sbjct 3013771 GACCAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGAC 3013712 Query 38418 TACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||||||||| |||||| | || || ||| | ||||||||| ||||||| ||| Sbjct 3013711 TACAACATCCAGAAGGAATCCACCCTCCATCTTGTGCTGCGTCTGAGAGGTGGC 3013658 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 498380805900800