Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apalone_20spinifera_20[genbank_20GCA_5F000385615.1_202013-05-03] 286,620 sequences; 1,931,078,847 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq285313 120 2e-21 >seq285313 Length=1148134 Score = 120 bits (132), Expect = 2e-21 Identities = 360/548 (66%), Gaps = 6/548 (1%) Strand=Plus/Minus Query 517610 GCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAA 517669 |||||||| || ||||||||||||||||| | | | || || | ||| |||||||| Sbjct 650962 GCACCATAAGCCACAGCTTCATCAGGATTGATGCTCTTGTTCAGCTCTTTCCCATTGAAG 650903 Query 517670 AAATTTGAAAGAAGTTGTCT-TACCTTAGGAATACGAGATGATCCTCCAACTAATACAAT 517728 |||| || |||| ||| | ||| || ||||| | |||||| ||||| | |||||| Sbjct 650902 AAATCCTGCAGGAGTT-TCTGAATCTTGGGGATACGGGTTGATCCGCCAACCAGTACAAT 650844 Query 517729 TTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAG 517788 ||||| | |||||||| || ||||| | |||| | | || || || || || || Sbjct 650843 GTCATGGATTTGTGATTTGTCTAGTTTGGCATCCCGCAGGGCCTTCTCTACAGGATCCAG 650784 Query 517789 ACCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATT 517848 | | | |||| || | | | ||||| || |||||| || | | | | Sbjct 650783 AGTGCCACGGAACAGATCAGCATTTAACTCTTCAAAACGAGCTCTGGTTATTGAGGTGTA 650724 Query 517849 ATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAG 517908 | | ||||| || || | | || |||| |||||| | | ||||| ||| || || Sbjct 650723 AAAGTCAATGCCCTCATAGAGCGAGTCAATTTCAATACTGGCCTGAGTGCTAGAGGAGAG 650664 Query 517909 TGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGAT-TGAT 517967 | ||| |||||||||||||||||||| | ||| | || | || | | || | | | Sbjct 650663 AGTACGCTTAGCACGTTCACATGCTGTGCGTAGCCGGCGAACTGC-TCTCTTGTTCTCAG 650605 Query 517968 TCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAA-CACACCATGTTACAAGACGATTA 518026 | | || | || | || | |||||| || ||| | | || | || | ||| ||| Sbjct 650604 TAATGTCCTTCTTGTGCTTACGCTTGAATTCAGCAATGAAATGAT-TGACCATACGGTTA 650546 Query 518027 TCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCA 518086 ||||| || || || ||||| | |||| || | || | | |||| || | ||| Sbjct 650545 TCAAAGTCCTCCCCACCCAAGTGGGTATCACCAGCAGTTGACTTCACTTCAAAGATGCCA 650486 Query 518087 TCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACA 518146 || |||| || | | | ||||| || ||||| || | ||||| ||||| ||| Sbjct 650485 TCCTCAATAGTGAGGATTGAAACATCGAAAGTGCCACCCCCAAGGTCAAAGATAAGGACA 650426 Query 518147 TTCATTTC 518154 ||| |||| Sbjct 650425 TTCCTTTC 650418 Score = 95.1 bits (104), Expect = 9e-14 Identities = 107/142 (75%), Gaps = 1/142 (1%) Strand=Plus/Minus Query 518172 CAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGAC 518231 |||| || || |||| |||||||||||| |||||||| || || || | |||||||||| Sbjct 650304 CAAG-CCGTAAGCAATAGCAGCAGCAGTCGGTTCATTGATGATCCTGAGCACATTAAGAC 650246 Query 518232 CAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAA 518291 | ||||| |||| |||||||| ||||| || | || || || || || || || || | Sbjct 650245 CCGCAATGGTTCCAGCATCTTTTGTGGCCTGGCGCTGAGAGTCATTGAAGTAGGCTGGTA 650186 Query 518292 CAGTAATAACGGCATCAGTTAC 518313 | || | || |||| ||| || Sbjct 650185 CTGTGACCACTGCATTAGTAAC 650164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3766599371473720