Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apalone_20spinifera_20[genbank_20GCA_5F000385615.1_202013-05-03] 286,620 sequences; 1,931,078,847 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq285804 93.3 5e-14 seq261677 89.7 6e-13 seq284989 86.0 7e-12 seq281523 86.0 7e-12 seq260899 86.0 7e-12 seq241252 86.0 7e-12 seq172074 86.0 7e-12 seq162409 86.0 7e-12 seq153513 86.0 7e-12 seq152121 86.0 7e-12 seq2187 86.0 7e-12 seq284985 84.2 3e-11 seq32345 84.2 3e-11 seq216953 82.4 9e-11 seq7735 82.4 9e-11 seq5754 82.4 9e-11 >seq285804 Length=5861001 Score = 93.3 bits (102), Expect = 5e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 4812126 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 4812068 >seq261677 Length=248 Score = 89.7 bits (98), Expect = 6e-13 Identities = 54/57 (95%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCC 136773 ||||||||||||||||||||||||||| ||||||||||||||| |||||| |||||| Sbjct 76 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCATGGGTTCAAGCCCC 132 >seq284989 Length=2945 Score = 86.0 bits (94), Expect = 7e-12 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCC 136773 ||||||||||||||||||||||||||| ||||||||||||||| |||||| | |||| Sbjct 968 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCATGGGTTCAACCCCC 1024 >seq281523 Length=416 Score = 86.0 bits (94), Expect = 7e-12 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCC 136773 ||||||||||||||||||| ||||||| ||||||||||||||| |||||| |||||| Sbjct 77 TAGCTCAGTTGGTTAGAGCTTGGTGCTAATAACGCCAAGGTCATGGGTTCAAGCCCC 133 >seq260899 Length=298 Score = 86.0 bits (94), Expect = 7e-12 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCC 136773 ||||||||||||||||||||||||||| |||||||||||||| |||||| |||||| Sbjct 161 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGTGGGTTCAAGCCCC 105 >seq241252 Length=415 Score = 86.0 bits (94), Expect = 7e-12 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCC 136773 ||||||||||||||||||||||||||| ||||||||||||||| |||||| | |||| Sbjct 200 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCATGGGTTCAACCCCC 144 >seq172074 Length=740 Score = 86.0 bits (94), Expect = 7e-12 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCC 136773 ||||||||||||||||||||||||||| |||||||||||||| |||||| |||||| Sbjct 407 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGTGGGTTCAAGCCCC 463 >seq162409 Length=341 Score = 86.0 bits (94), Expect = 7e-12 Identities = 58/64 (91%), Gaps = 2/64 (3%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCC--G 136774 ||||||||||||||||||||||||||| |||| |||||||||| |||||| |||||| | Sbjct 189 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAATGCCAAGGTCATGGGTTCAAGCCCCATG 130 Query 136775 TTGG 136778 |||| Sbjct 129 TTGG 126 >seq153513 Length=366 Score = 86.0 bits (94), Expect = 7e-12 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCC 136773 ||||||||||||||||||||||||||| ||||||||||||||| |||||| | |||| Sbjct 138 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCATGGGTTCAACCCCC 194 >seq152121 Length=2114 Score = 86.0 bits (94), Expect = 7e-12 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCC 136773 |||||||||||||||||| |||||||| ||||||||||||||| |||||| |||||| Sbjct 771 TAGCTCAGTTGGTTAGAGTGTGGTGCTAATAACGCCAAGGTCATGGGTTCAAGCCCC 827 >seq2187 Length=298 Score = 86.0 bits (94), Expect = 7e-12 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCC 136773 ||||||||||||||||||||||||||| ||||||||||||||| |||||| | |||| Sbjct 171 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCATGGGTTCAACCCCC 115 >seq284985 Length=906 Score = 84.2 bits (92), Expect = 3e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCC 136772 ||||||||||||||||||||||||||| |||| |||||||||| |||||| ||||| Sbjct 901 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAATGCCAAGGTCATGGGTTCAAGCCC 846 >seq32345 Length=210 Score = 84.2 bits (92), Expect = 3e-11 Identities = 61/70 (87%), Gaps = 2/70 (3%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCC--CG 136774 |||||||||||||||||| |||||||| |||| |||||||||| |||||| ||||| | Sbjct 145 TAGCTCAGTTGGTTAGAGAGTGGTGCTAATAATGCCAAGGTCATGGGTTCAAGCCCTATG 86 Query 136775 TTGGGAACAG 136784 ||||| |||| Sbjct 85 TTGGGCACAG 76 >seq216953 Length=295 Score = 82.4 bits (90), Expect = 9e-11 Identities = 48/50 (96%), Gaps = 0/50 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTC 136766 ||||||||||||||||||||||||||| ||||||||||||||| |||||| Sbjct 245 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCATGGGTTC 294 >seq7735 Length=670 Score = 82.4 bits (90), Expect = 9e-11 Identities = 51/55 (93%), Gaps = 0/55 (0%) Strand=Plus/Plus Query 136718 AGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCC 136772 |||||||||||||||||| ||||||| ||||||||||||||| |||||| ||||| Sbjct 340 AGCTCAGTTGGTTAGAGCATGGTGCTAATAACGCCAAGGTCATGGGTTCAAGCCC 394 >seq5754 Length=281 Score = 82.4 bits (90), Expect = 9e-11 Identities = 57/64 (89%), Gaps = 2/64 (3%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCC--G 136774 ||||||||||||||||||||||||||| |||| ||||| |||| |||||| |||||| | Sbjct 136 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAATGCCAATGTCATGGGTTCAAGCCCCATG 77 Query 136775 TTGG 136778 |||| Sbjct 76 TTGG 73 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 586865846236000