Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apalone_20spinifera_20[genbank_20GCA_5F000385615.1_202013-05-03] 286,620 sequences; 1,931,078,847 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq284675 152 1e-31 >seq284675 Length=1105255 Score = 152 bits (168), Expect = 1e-31 Identities = 160/209 (77%), Gaps = 6/209 (3%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| |||||||| ||||| || || ||||| || | || || | ||||||||| ||||| Sbjct 341443 GTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCTGACAGGGTGCGCCCATCTTCTAGCTG 341502 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || || ||||| | | || || ||||||||||||||||||||||| || ||||| Sbjct 341503 CTTCCCAGCAAAGATCAACCTCTGCTGATCTGGAGGAATGCCTTCTTTGTCCTGGATTTT 341562 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTCTTTCC 195113 |||||| |||||||||||||| ||| || ||||| || || | ||||| || Sbjct 341563 GGCCTTGACATTCTCAATGGTGTC---ACTGGGCTCTACTTCTAGCGTGATGGTCTTGCC 341619 Query 195114 TGTCAAAGTTTTTACGAACACTTGCATTT 195142 ||||| |||||||| || | ||||||| Sbjct 341620 AGTCAAGGTTTTTACAAAGATCTGCATTT 341648 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1105407229917540